Processing Succinct Matrices and Vectors

We study the complexity of algorithmic problems for matrices that are represented by multi-terminal decision diagrams (MTDD). These are a variant of ordered decision diagrams, where the terminal nodes are labeled with arbitrary elements of a semiring (instead of 0 and 1). A simple example shows that the product of two MTDD-represented matrices cannot be represented by an MTDD of polynomial size. To overcome this deficiency, we extended MTDDs to MTDD_+ by allowing componentwise symbolic addition of variables (of the same dimension) in rules. It is shown that accessing an entry, equality checking, matrix multiplication, and other basic matrix operations can be solved in polynomial time for MTDD_+-represented matrices. On the other hand, testing whether the determinant of a MTDD-represented matrix vanishes PSPACE$-complete, and the same problem is NP-complete for MTDD_+-represented diagonal matrices. Computing a specific entry in a product of MTDD-represented matrices is #P-complete.Comment: An extended abstract of this paper will appear in the Proceedings of CSR 201

Path Logics for Querying Graphs: Combining Expressiveness and Efficiency

International audienceWe study logics expressing properties of paths in graphs that are tailored to querying graph databases: a data model for new applications such as social networks, the Semantic Web, biological data, crime detection, and others. The basic construct of such logics, a regular path query, checks for paths whose labels belong to a regular language. These logics fail to capture two commonly needed features: counting properties, and the ability to compare paths. It is known that regular path-comparison relations (e.g., prefix or equality) can be added without significant complexity overhead; however, adding common relations often demanded by applications (e.g., subword, subsequence, suffix) results in either undecidability or astronomical complexity. We propose, as a way around this problem, to use automata with counting functionalities, namely Parikh automata. They express many counting properties directly, and they approximate many relations of interest. We prove that with Parikh automata defining both languages and relations used in queries, we retain the low complexity of the standard path logics for graphs. In particular, this gives us efficient approximations to queries with prohibitively high complexity. We extend the best known decidability results by showing that even more expressive classes of relations are possible in query languages (sometimes with restriction on the shape of formulae). We also show that Parikh automata admit two convenient representations by analogs of regular expressions, making them usable in real-life querying

Chrobak Normal Form Revisited, with Applications

Abstract. It is well known that any nondeterministic finite automata over a unary alphabet can be represented in a certain normal form called the Chrobak normal form [1]. We present a very simple conversion pro-cedure working in O(n3) time. Then we extend the algorithm to improve two trade-offs concerning conversions between different representations of unary regular languages. Given an n-state NFA, we are able to find a regular expression of size O ( n2 logn) describing the same language (which improves the previously known O(n2) size bound [8]) and a context-free grammar in Chomsky normal form with O(√n logn) nonterminals (which improves the previously known O(n2/3) bound [3]). As a byproduct of our conversion procedure, we get an alternative proof of the Chrobak normal form theorem. We believe that its efficiency and simplicity make the effort of reproving an already known result worth-while. Key-words: unary automata, descriptional complexity

26. Theorietag Automaten und Formale Sprachen 23. Jahrestagung Logik in der Informatik: Tagungsband

Der Theorietag ist die Jahrestagung der Fachgruppe Automaten und Formale Sprachen der Gesellschaft für Informatik und fand erstmals 1991 in Magdeburg statt. Seit dem Jahr 1996 wird der Theorietag von einem eintägigen Workshop mit eingeladenen Vorträgen begleitet. Die Jahrestagung der Fachgruppe Logik in der Informatik der Gesellschaft für Informatik fand erstmals 1993 in Leipzig statt. Im Laufe beider Jahrestagungen finden auch die jährliche Fachgruppensitzungen statt. In diesem Jahr wird der Theorietag der Fachgruppe Automaten und Formale Sprachen erstmalig zusammen mit der Jahrestagung der Fachgruppe Logik in der Informatik abgehalten. Organisiert wurde die gemeinsame Veranstaltung von der Arbeitsgruppe Zuverlässige Systeme des Instituts für Informatik an der Christian-Albrechts-Universität Kiel vom 4. bis 7. Oktober im Tagungshotel Tannenfelde bei Neumünster. Während des Tre↵ens wird ein Workshop für alle Interessierten statt finden. In Tannenfelde werden • Christoph Löding (Aachen) • Tomás Masopust (Dresden) • Henning Schnoor (Kiel) • Nicole Schweikardt (Berlin) • Georg Zetzsche (Paris) eingeladene Vorträge zu ihrer aktuellen Arbeit halten. Darüber hinaus werden 26 Vorträge von Teilnehmern und Teilnehmerinnen gehalten, 17 auf dem Theorietag Automaten und formale Sprachen und neun auf der Jahrestagung Logik in der Informatik. Der vorliegende Band enthält Kurzfassungen aller Beiträge. Wir danken der Gesellschaft für Informatik, der Christian-Albrechts-Universität zu Kiel und dem Tagungshotel Tannenfelde für die Unterstützung dieses Theorietags. Ein besonderer Dank geht an das Organisationsteam: Maike Bradler, Philipp Sieweck, Joel Day. Kiel, Oktober 2016 Florin Manea, Dirk Nowotka und Thomas Wilk

On Deciding Linear Arithmetic Constraints Over p-adic Integers for All Primes

Given an existential formula Φ of linear arithmetic over p-adic integers together with valuation constraints, we study the p-universality problem which consists of deciding whether Φ is satisfiable for all primes p, and the analogous problem for the closely related existential theory of Büchi arithmetic. Our main result is a coNEXP upper bound for both problems, together with a matching lower bound for existential Büchi arithmetic. On a technical level, our results are obtained from analysing properties of a certain class of p-automata, finite-state automata whose languages encode sets of tuples of natural numbers

Formal models of the extension activity of DNA polymerase enzymes

The study of formal language operations inspired by enzymatic actions on DNA is part of ongoing efforts to provide a formal framework and rigorous treatment of DNA-based information and DNA-based computation. Other studies along these lines include theoretical explorations of splicing systems, insertion-deletion systems, substitution, hairpin extension, hairpin reduction, superposition, overlapping concatenation, conditional concatenation, contextual intra- and intermolecular recombinations, as well as template-guided recombination. First, a formal language operation is proposed and investigated, inspired by the naturally occurring phenomenon of DNA primer extension by a DNA-template-directed DNA polymerase enzyme. Given two DNA strings u and v, where the shorter string v (called the primer) is Watson-Crick complementary and can thus bind to a substring of the longer string u (called the template) the result of the primer extension is a DNA string that is complementary to a suffix of the template which starts at the binding position of the primer. The operation of DNA primer extension can be abstracted as a binary operation on two formal languages: a template language L1 and a primer language L2. This language operation is called L1-directed extension of L2 and the closure properties of various language classes, including the classes in the Chomsky hierarchy, are studied under directed extension. Furthermore, the question of finding necessary and sufficient conditions for a given language of target strings to be generated from a given template language when the primer language is unknown is answered. The canonic inverse of directed extension is used in order to obtain the optimal solution (the minimal primer language) to this question. The second research project investigates properties of the binary string and language operation overlap assembly as defined by Csuhaj-Varju, Petre and Vaszil as a formal model of the linear self-assembly of DNA strands: The overlap assembly of two strings, xy and yz, which share an overlap y, results in the string xyz. In this context, we investigate overlap assembly and its properties: closure properties of various language families under this operation, and related decision problems. A theoretical analysis of the possible use of iterated overlap assembly to generate combinatorial DNA libraries is also given. The third research project continues the exploration of the properties of the overlap assembly operation by investigating closure properties of various language classes under iterated overlap assembly, and the decidability of the completeness of a language. The problem of deciding whether a given string is terminal with respect to a language, and the problem of deciding if a given language can be generated by an overlap assembly operation of two other given languages are also investigated