12,591 research outputs found
GPstruct: Bayesian structured prediction using Gaussian processes
We introduce a conceptually novel structured prediction model, GPstruct, which is kernelized, non-parametric and Bayesian, by design. We motivate the model with respect to existing approaches, among others, conditional random fields (CRFs), maximum margin Markov networks (M ^3 N), and structured support vector machines (SVMstruct), which embody only a subset of its properties. We present an inference procedure based on Markov Chain Monte Carlo. The framework can be instantiated for a wide range of structured objects such as linear chains, trees, grids, and other general graphs. As a proof of concept, the model is benchmarked on several natural language processing tasks and a video gesture segmentation task involving a linear chain structure. We show prediction accuracies for GPstruct which are comparable to or exceeding those of CRFs and SVMstruct
Learning Discriminative Bayesian Networks from High-dimensional Continuous Neuroimaging Data
Due to its causal semantics, Bayesian networks (BN) have been widely employed
to discover the underlying data relationship in exploratory studies, such as
brain research. Despite its success in modeling the probability distribution of
variables, BN is naturally a generative model, which is not necessarily
discriminative. This may cause the ignorance of subtle but critical network
changes that are of investigation values across populations. In this paper, we
propose to improve the discriminative power of BN models for continuous
variables from two different perspectives. This brings two general
discriminative learning frameworks for Gaussian Bayesian networks (GBN). In the
first framework, we employ Fisher kernel to bridge the generative models of GBN
and the discriminative classifiers of SVMs, and convert the GBN parameter
learning to Fisher kernel learning via minimizing a generalization error bound
of SVMs. In the second framework, we employ the max-margin criterion and build
it directly upon GBN models to explicitly optimize the classification
performance of the GBNs. The advantages and disadvantages of the two frameworks
are discussed and experimentally compared. Both of them demonstrate strong
power in learning discriminative parameters of GBNs for neuroimaging based
brain network analysis, as well as maintaining reasonable representation
capacity. The contributions of this paper also include a new Directed Acyclic
Graph (DAG) constraint with theoretical guarantee to ensure the graph validity
of GBN.Comment: 16 pages and 5 figures for the article (excluding appendix
Classification of protein interaction sentences via gaussian processes
The increase in the availability of protein interaction studies in textual format coupled with the demand for easier access to the key results has lead to a need for text mining solutions. In the text processing pipeline, classification is a key step for extraction of small sections of relevant text. Consequently, for the task of locating protein-protein interaction sentences, we examine the use of a classifier which has rarely been applied to text, the Gaussian processes (GPs). GPs are a non-parametric probabilistic analogue to the more popular support vector machines (SVMs). We find that GPs outperform the SVM and na\"ive Bayes classifiers on binary sentence data, whilst showing equivalent performance on abstract and multiclass sentence corpora. In addition, the lack of the margin parameter, which requires costly tuning, along with the principled multiclass extensions enabled by the probabilistic framework make GPs an appealing alternative worth of further adoption
- …