Simulations and Algorithms on Reconfigurable Meshes With Pipelined Optical Buses.

Recently, many models using reconfigurable optically pipelined buses have been proposed in the literature. A system with an optically pipelined bus uses optical waveguides, with unidirectional propagation and predictable delays, instead of electrical buses to transfer information among processors. These two properties enable synchronized concurrent access to an optical bus in a pipelined fashion. Combined with the abilities of the bus structure to broadcast and multicast, this architecture suits many communication-intensive applications. We establish the equivalence of three such one-dimensional optical models, namely the LARPBS, LPB, and POB. This implies an automatic translation of algorithms (without loss of speed or efficiency) among these models. In particular, since the LPB is the same as an LARPBS without the ability to segment its buses, their equivalence establishes reconfigurable delays (rather than segmenting ability) as the key to the power of optically pipelined models. We also present simulations for a number of two-dimensional optical models and establish that they possess the same complexity, so that any of these models can simulate a step of one of the other models in constant time with a polynomial increase in size. Specifically, we determine the complexity of three two-dimensional optical models (the PR-Mesh, APPBS, and AROB) to be the same as the well known LR-Mesh and the cycle-free LR-Mesh. We develop algorithms for the LARPBS and PR-Mesh that are more efficient than existing algorithms in part by exploiting the pipelining, segmenting, and multicasting characteristics of these models. We also consider the implications of certain physical constraints placed on the system by restricting the distance over which two processors are able to communicate. All algorithms developed for these models assume that a healthy system is available. We present some fundamental algorithms that are able to tolerate up to N/2 faults on an N-processor LARPBS. We then extend these results to apply to other algorithms in the areas of image processing and matrix operations

Simulating a Pipelined Reconfigurable Mesh on a Linear Array with a Reconfigurable Pipelined Bus System

Due to the unidirectional nature of propagation and predictable delays, optically pipelined buses have been gaining more attention. There have been many models proposed over time that use reconfigurable optically pipelined buses. The reconfigurable nature of the models makes them capable of changing their component’s functionalities and structure that connects the components at every step of computation. There are both one dimensional as well as k –dimensional models that have been proposed in the literature. Though equivalence between various one dimensional models and equivalence between different two dimensional models had been established, so far there has not been any attempt to explore the relationship between a one dimensional model and a two dimensional model. In the proposed research work it is shown that a move from one to two or more dimensions does not cause any increase in the volume of communication between the processors as they communicate in a pipelined manner on the same optical bus. When moving from two dimensions to one dimension, the challenge is to map the processors so that those belonging to a two-dimensional bus segment are contiguous and in the same order on the one-dimensional model. This does not increase any increase in communication overhead as the processors instead of communicating on two dimensional buses now communicate on a linear one dimensional bus structure. To explore the relationship between one dimensional and two dimensional models a commonly used model Linear Array with a Reconfigurable Pipelined Bus System (LARPBS) and its two dimensional counterpart Pipelined Reconfigurable Mesh (PR-Mesh) are chosen Here an attempt has been made to present a simulation of a two dimensional PR-Mesh on a one dimensional LARPBS to establish complexity of the models with respect to one another, and to determine the efficiency with which the LARPBS can simulate the PR-Mesh

Design and Analysis of Optical Interconnection Networks for Parallel Computation.

In this doctoral research, we propose several novel protocols and topologies for the interconnection of massively parallel processors. These new technologies achieve considerable improvements in system performance and structure simplicity. Currently, synchronous protocols are used in optical TDM buses. The major disadvantage of a synchronous protocol is the waste of packet slots. To offset this inherent drawback of synchronous TDM, a pipelined asynchronous TDM optical bus is proposed. The simulation results show that the performance of the proposed bus is significantly better than that of known pipelined synchronous TDM optical buses. Practically, the computation power of the plain TDM protocol is limited. Various extensions must be added to the system. In this research, a new pipelined optical TDM bus for implementing a linear array parallel computer architecture is proposed. The switches on the receiving segment of the bus can be dynamically controlled, which make the system highly reconfigurable. To build large and scalable systems, we need new network architectures that are suitable for optical interconnections. A new kind of reconfigurable bus called segmented bus is introduced to achieve reduced structure simplicity and increased concurrency. We show that parallel architectures based on segmented buses are versatile by showing that it can simulate parallel communication patterns supported by a wide variety of networks with small slowdown factors. New kinds of interconnection networks, the hypernetworks, have been proposed recently. Compared with point-to-point networks, they allow for increased resource-sharing and communication bandwidth utilization, and they are especially suitable for optical interconnects. One way to derive a hypernetwork is by finding the dual of a point-to-point network. Hypercube Q\sb{n}, where n is the dimension, is a very popular point-to-point network. It is interesting to construct hypernetworks from the dual Q\sbsp{n}{*} of hypercube of Q\sb{n}. In this research, the properties of Q\sbsp{n}{*} are investigated and a set of fundamental data communication algorithms for Q\sbsp{n}{*} are presented. The results indicate that the Q\sbsp{n}{*} hypernetwork is a useful and promising interconnection structure for high-performance parallel and distributed computing systems

Scaling Simulations of Reconfigurable Meshes.

This dissertation deals with reconfigurable bus-based models, a new type of parallel machine that uses dynamically alterable connections between processors to allow efficient communication and to perform fast computations. We focus this work on the Reconfigurable Mesh (R-Mesh), one of the most widely studied reconfigurable models. We study the ability of the R-Mesh to adapt an algorithm instance of an arbitrary size to run on a given smaller model size without significant loss of efficiency. A scaling simulation achieves this adaptation, and the simulation overhead expresses the efficiency of the simulation. We construct a scaling simulation for the Fusing-Restricted Reconfigurable Mesh (FR-Mesh), an important restriction of the R-Mesh. The overhead of this simulation depends only on the simulating machine size and not on the simulated machine size. The results of this scaling simulation extend to a variety of concurrent write rules and also translate to an improved scaling simulation of the R-Mesh itself. We present a bus linearization procedure that transforms an arbitrary non-linear bus configuration of an R-Mesh into an equivalent acyclic linear bus configuration implementable on an Linear Reconfigurable Mesh (LR-Mesh), a weaker version of the R-Mesh. This procedure gives the algorithm designer the liberty of using buses of arbitrary shape, while automatically translating the algorithm to run on a simpler platform. We illustrate our bus linearization method through two important applications. The first leads to a faster scaling simulation of the R-Mesh. The second application adapts algorithms designed for R-Meshes to run on models with pipelined optical buses. We also present a simulation of a Directional Reconfigurable Mesh (DR-Mesh) on an LR-Mesh. This simulation has a much better efficiency compared to previous work. In addition to the LR-Mesh, this simulation also runs on models that use pipelined optical buses

Ein flexibles, heterogenes Bildverarbeitungs-Framework für weltraumbasierte, rekonfigurierbare Datenverarbeitungsmodule

Scientific instruments as payload of current space missions are often equipped with high-resolution sensors. Thereby, especially camera-based instruments produce a vast amount of data. To obtain the desired scientific information, this data usually is processed on ground. Due to the high distance of missions within the solar system, the data rate for downlink to the ground station is strictly limited. The volume of scientific relevant data is usually less compared to the obtained raw data. Therefore, processing already has to be carried out on-board the spacecraft. An example of such an instrument is the Polarimetric and Helioseismic Imager (PHI) on-board Solar Orbiter. For acquisition, storage and processing of images, the instrument is equipped with a Data Processing Module (DPM). It makes use of heterogeneous computing based on a dedicated LEON3 processor in combination with two reconfigurable Xilinx Virtex-4 Field-Programmable Gate Arrays (FPGAs). The thesis will provide an overview of the available space-grade processing components (processors and FPGAs) which fulfill the requirements of deepspace missions. It also presents existing processing platforms which are based upon a heterogeneous system combining processors and FPGAs. This also includes the DPM of the PHI instrument, whose architecture will be introduced in detail. As core contribution of this thesis, a framework will be presented which enables high-performance image processing on such hardware-based systems while retaining software-like flexibility. This framework mainly consists of a variety of modules for hardware acceleration which are integrated seamlessly into the data flow of the on-board software. Supplementary, it makes extensive use of the dynamic in-flight reconfigurability of the used Virtex-4 FPGAs. The flexibility of the presented framework is proven by means of multiple examples from within the image processing of the PHI instrument. The framework is analyzed with respect to processing performance as well as power consumption.Wissenschaftliche Instrumente auf aktuellen Raumfahrtmissionen sind oft mit hochauflösenden Sensoren ausgestattet. Insbesondere kamerabasierte Instrumente produzieren dabei eine große Menge an Daten. Diese werden üblicherweise nach dem Empfang auf der Erde weiterverarbeitet, um daraus wissenschaftlich relevante Informationen zu gewinnen. Aufgrund der großen Entfernung von Missionen innerhalb unseres Sonnensystems ist die Datenrate zur Übertragung an die Bodenstation oft sehr begrenzt. Das Volumen der wissenschaftlich relevanten Daten ist meist deutlich kleiner als die aufgenommenen Rohdaten. Daher ist es vorteilhaft, diese bereits an Board der Sonde zu verarbeiten. Ein Beispiel für solch ein Instrument ist der Polarimetric and Helioseismic Imager (PHI) an Bord von Solar Orbiter. Um die Daten aufzunehmen, zu speichern und zu verarbeiten, ist das Instrument mit einem Data Processing Module (DPM) ausgestattet. Dieses nutzt ein heterogenes Rechnersystem aus einem dedizierten LEON3 Prozessor, zusammen mit zwei rekonfigurierbaren Xilinx Virtex-4 Field-Programmable Gate Arrays (FPGAs). Die folgende Arbeit gibt einen Überblick über verfügbare Komponenten zur Datenverarbeitung (Prozessoren und FPGAs), die den Anforderungen von Raumfahrtmissionen gerecht werden, und stellt einige existierende Plattformen vor, die auf einem heterogenen System aus Prozessor und FPGA basieren. Hierzu gehört auch das Data Processing Module des PHI Instrumentes, dessen Architektur im Verlauf dieser Arbeit beschrieben wird. Als Kernelement der Dissertation wird ein Framework vorgestellt, das sowohl eine performante, als auch eine flexible Bilddatenverarbeitung auf einem solchen System ermöglicht. Dieses Framework besteht aus verschiedenen Modulen zur Hardwarebeschleunigung und bindet diese nahtlos in den Datenfluss der On-Board Software ein. Dabei wird außerdem die Möglichkeit genutzt, die eingesetzten Virtex-4 FPGAs dynamisch zur Laufzeit zu rekonfigurieren. Die Flexibilität des vorgestellten Frameworks wird anhand mehrerer Fallbeispiele aus der Bildverarbeitung von PHI dargestellt. Das Framework wird bezüglich der Verarbeitungsgeschwindigkeit und Energieeffizienz analysiert

Parallel progressive multiple sequence alignment on reconfigurable meshes

<p>Abstract</p> <p>Background</p> <p>One of the most fundamental and challenging tasks in bio-informatics is to identify related sequences and their hidden biological significance. The most popular and proven best practice method to accomplish this task is aligning multiple sequences together. However, multiple sequence alignment is a computing extensive task. In addition, the advancement in DNA/RNA and Protein sequencing techniques has created a vast amount of sequences to be analyzed that exceeding the capability of traditional computing models. Therefore, an effective parallel multiple sequence alignment model capable of resolving these issues is in a great demand.</p> <p>Results</p> <p>We design <it>O</it>(1) run-time solutions for both local and global dynamic programming pair-wise alignment algorithms on reconfigurable mesh computing model. To align <it>m </it>sequences with max length <it>n</it>, we combining the parallel pair-wise dynamic programming solutions with newly designed parallel components. We successfully reduce the progressive multiple sequence alignment algorithm's run-time complexity from <it>O</it>(<it>m </it>× <it>n</it>⁴) to <it>O</it>(<it>m</it>) using <it>O</it>(<it>m </it>× <it>n</it>³) processing units for scoring schemes that use three distinct values for match/mismatch/gap-extension. The general solution to multiple sequence alignment algorithm takes <it>O</it>(<it>m </it>× <it>n</it>⁴) processing units and completes in <it>O</it>(<it>m</it>) time.</p> <p>Conclusions</p> <p>To our knowledge, this is the first time the progressive multiple sequence alignment algorithm is completely parallelized with <it>O</it>(<it>m</it>) run-time. We also provide a new parallel algorithm for the Longest Common Subsequence (LCS) with <it>O</it>(1) run-time using <it>O</it>(<it>n</it>³) processing units. This is a big improvement over the current best constant-time algorithm that uses <it>O</it>(<it>n</it>⁴) processing units.</p

Accelerated computation using runtime partial reconfiguration

Runtime reconfigurable architectures, which integrate a hard processor core along with a reconfigurable fabric on a single device, allow to accelerate a computation by means of hardware accelerators implemented in the reconfigurable fabric. Runtime partial reconfiguration provides the flexibility to dynamically change these hardware accelerators to adapt the computing capacity of the system. This thesis presents the evaluation of design paradigms which exploit partial reconfiguration to implement compute intensive applications on such runtime reconfigurable architectures. For this purpose, image processing applications are implemented on Zynq-7000, a System on a Chip (SoC) from Xilinx Inc. which integrates an ARM Cortex A9 with a reconfigurable fabric. This thesis studies different image processing applications to select suitable candidates that benefit if implemented on the above mentioned class of reconfigurable architectures using runtime partial reconfiguration. Different Intellectual Property (IP) cores for executing basic image operations are generated using high level synthesis for the implementation. A software based scheduler, executed in the Linux environment running on the ARM core, is responsible for implementing the image processing application by means of loading appropriate IP cores into the reconfigurable fabric. The implementation is evaluated to measure the application speed up, resource savings, power savings and the delay on account of partial reconfiguration. The results of the thesis suggest that the use of partial reconfiguration to implement an application provides FPGA resource savings. The extent of resource savings depend on the granularity of the operations into which the application is decomposed. The thesis could also establish that runtime partial reconfiguration can be used to accelerate the computations in reconfigurable architectures with processor core like the Zynq-7000 platform. The achieved computational speed-up depends on factors like the number of hardware accelerators used for the computation and the used reconfiguration schedule. The thesis also highlights the power savings that may be achieved by executing computations in the reconfigurable fabric instead of the processor core

Radar Technology

In this book “Radar Technology”, the chapters are divided into four main topic areas: Topic area 1: “Radar Systems” consists of chapters which treat whole radar systems, environment and target functional chain. Topic area 2: “Radar Applications” shows various applications of radar systems, including meteorological radars, ground penetrating radars and glaciology. Topic area 3: “Radar Functional Chain and Signal Processing” describes several aspects of the radar signal processing. From parameter extraction, target detection over tracking and classification technologies. Topic area 4: “Radar Subsystems and Components” consists of design technology of radar subsystem components like antenna design or waveform design

System on fabrics utilising distributed computing

The main vision of wearable computing is to make electronic systems an important part of everyday clothing in the future which will serve as intelligent personal assistants. Wearable devices have the potential to be wearable computers and not mere input/output devices for the human body. The present thesis focuses on introducing a new wearable computing paradigm, where the processing elements are closely coupled with the sensors that are distributed using Instruction Systolic Array (ISA) architecture. The thesis describes a novel, multiple sensor, multiple processor system architecture prototype based on the Instruction Systolic Array paradigm for distributed computing on fabrics. The thesis introduces new programming model to implement the distributed computer on fabrics. The implementation of the concept has been validated using parallel algorithms. A real-time shape sensing and reconstruction application has been implemented on this architecture and has demonstrated a physical design for a wearable system based on the ISA concept constructed from off-the-shelf microcontrollers and sensors. Results demonstrate that the real time application executes on the prototype ISA implementation thus confirming the viability of the proposed architecture for fabric-resident computing devices