Weighted ancestors in suffix trees

The classical, ubiquitous, predecessor problem is to construct a data structure for a set of integers that supports fast predecessor queries. Its generalization to weighted trees, a.k.a. the weighted ancestor problem, has been extensively explored and successfully reduced to the predecessor problem. It is known that any solution for both problems with an input set from a polynomially bounded universe that preprocesses a weighted tree in O(n polylog(n)) space requires \Omega(loglogn) query time. Perhaps the most important and frequent application of the weighted ancestors problem is for suffix trees. It has been a long-standing open question whether the weighted ancestors problem has better bounds for suffix trees. We answer this question positively: we show that a suffix tree built for a text w[1..n] can be preprocessed using O(n) extra space, so that queries can be answered in O(1) time. Thus we improve the running times of several applications. Our improvement is based on a number of data structure tools and a periodicity-based insight into the combinatorial structure of a suffix tree.Comment: 27 pages, LNCS format. A condensed version will appear in ESA 201

Distance labeling schemes for trees

We consider distance labeling schemes for trees: given a tree with $n$ nodes, label the nodes with binary strings such that, given the labels of any two nodes, one can determine, by looking only at the labels, the distance in the tree between the two nodes. A lower bound by Gavoille et. al. (J. Alg. 2004) and an upper bound by Peleg (J. Graph Theory 2000) establish that labels must use $\Theta(\log^2 n)$ bits\footnote{Throughout this paper we use $\log$ for $\log_2$.}. Gavoille et. al. (ESA 2001) show that for very small approximate stretch, labels use $\Theta(\log n \log \log n)$ bits. Several other papers investigate various variants such as, for example, small distances in trees (Alstrup et. al., SODA'03). We improve the known upper and lower bounds of exact distance labeling by showing that $\frac{1}{4} \log^2 n$ bits are needed and that $\frac{1}{2} \log^2 n$ bits are sufficient. We also give ($1+\epsilon$)-stretch labeling schemes using $\Theta(\log n)$ bits for constant $\epsilon>0$. ($1+\epsilon$)-stretch labeling schemes with polylogarithmic label size have previously been established for doubling dimension graphs by Talwar (STOC 2004). In addition, we present matching upper and lower bounds for distance labeling for caterpillars, showing that labels must have size $2\log n - \Theta(\log\log n)$. For simple paths with $k$ nodes and edge weights in $[1,n]$, we show that labels must have size $\frac{k-1}{k}\log n+\Theta(\log k)$

Minimum Cuts in Near-Linear Time

We significantly improve known time bounds for solving the minimum cut problem on undirected graphs. We use a ``semi-duality'' between minimum cuts and maximum spanning tree packings combined with our previously developed random sampling techniques. We give a randomized algorithm that finds a minimum cut in an m-edge, n-vertex graph with high probability in O(m log^3 n) time. We also give a simpler randomized algorithm that finds all minimum cuts with high probability in O(n^2 log n) time. This variant has an optimal RNC parallelization. Both variants improve on the previous best time bound of O(n^2 log^3 n). Other applications of the tree-packing approach are new, nearly tight bounds on the number of near minimum cuts a graph may have and a new data structure for representing them in a space-efficient manner

Labeling Schemes with Queries

We study the question of ``how robust are the known lower bounds of labeling schemes when one increases the number of consulted labels''. Let $f$ be a function on pairs of vertices. An $f$-labeling scheme for a family of graphs \cF labels the vertices of all graphs in \cF such that for every graph G\in\cF and every two vertices $u,v\in G$, the value $f(u,v)$ can be inferred by merely inspecting the labels of $u$ and $v$. This paper introduces a natural generalization: the notion of $f$-labeling schemes with queries, in which the value $f(u,v)$ can be inferred by inspecting not only the labels of $u$ and $v$ but possibly the labels of some additional vertices. We show that inspecting the label of a single additional vertex (one {\em query}) enables us to reduce the label size of many labeling schemes significantly

Almost-Tight Distributed Minimum Cut Algorithms

We study the problem of computing the minimum cut in a weighted distributed message-passing networks (the CONGEST model). Let $\lambda$ be the minimum cut, $n$ be the number of nodes in the network, and $D$ be the network diameter. Our algorithm can compute $\lambda$ exactly in $O((\sqrt{n} \log^{*} n+D)\lambda^4 \log^2 n)$ time. To the best of our knowledge, this is the first paper that explicitly studies computing the exact minimum cut in the distributed setting. Previously, non-trivial sublinear time algorithms for this problem are known only for unweighted graphs when $\lambda\leq 3$ due to Pritchard and Thurimella's $O(D)$-time and $O(D+n^{1/2}\log^* n)$-time algorithms for computing $2$-edge-connected and $3$-edge-connected components. By using the edge sampling technique of Karger's, we can convert this algorithm into a $(1+\epsilon)$-approximation $O((\sqrt{n}\log^{*} n+D)\epsilon^{-5}\log^3 n)$-time algorithm for any $\epsilon>0$. This improves over the previous $(2+\epsilon)$-approximation $O((\sqrt{n}\log^{*} n+D)\epsilon^{-5}\log^2 n\log\log n)$-time algorithm and $O(\epsilon^{-1})$-approximation $O(D+n^{\frac{1}{2}+\epsilon} \mathrm{poly}\log n)$-time algorithm of Ghaffari and Kuhn. Due to the lower bound of $\Omega(D+n^{1/2}/\log n)$ by Das Sarma et al. which holds for any approximation algorithm, this running time is tight up to a $\mathrm{poly}\log n$ factor. To get the stated running time, we developed an approximation algorithm which combines the ideas of Thorup's algorithm and Matula's contraction algorithm. It saves an $\epsilon^{-9}\log^{7} n$ factor as compared to applying Thorup's tree packing theorem directly. Then, we combine Kutten and Peleg's tree partitioning algorithm and Karger's dynamic programming to achieve an efficient distributed algorithm that finds the minimum cut when we are given a spanning tree that crosses the minimum cut exactly once

Heaviest Induced Ancestors and Longest Common Substrings

Suppose we have two trees on the same set of leaves, in which nodes are weighted such that children are heavier than their parents. We say a node from the first tree and a node from the second tree are induced together if they have a common leaf descendant. In this paper we describe data structures that efficiently support the following heaviest-induced-ancestor query: given a node from the first tree and a node from the second tree, find an induced pair of their ancestors with maximum combined weight. Our solutions are based on a geometric interpretation that enables us to find heaviest induced ancestors using range queries. We then show how to use these results to build an LZ-compressed index with which we can quickly find with high probability a longest substring common to the indexed string and a given pattern