Phase-field boundary conditions for the voxel finite cell method: surface-free stress analysis of CT-based bone structures

The voxel finite cell method employs unfitted finite element meshes and voxel quadrature rules to seamlessly transfer CT data into patient-specific bone discretizations. The method, however, still requires the explicit parametrization of boundary surfaces to impose traction and displacement boundary conditions, which constitutes a potential roadblock to automation. We explore a phase-field based formulation for imposing traction and displacement constraints in a diffuse sense. Its essential component is a diffuse geometry model generated from metastable phase-field solutions of the Allen-Cahn problem that assumes the imaging data as initial condition. Phase-field approximations of the boundary and its gradient are then employed to transfer all boundary terms in the variational formulation into volumetric terms. We show that in the context of the voxel finite cell method, diffuse boundary conditions achieve the same accuracy as boundary conditions defined over explicit sharp surfaces, if the inherent length scales, i.e., the interface width of the phase-field, the voxel spacing and the mesh size, are properly related. We demonstrate the flexibility of the new method by analyzing stresses in a human femur and a vertebral body

Simulation of Free Surface Compressible Flows Via a Two Fluid Model

The purpose of this communication is to discuss the simulation of a free surface compressible flow between two fluids, typically air and water. We use a two fluid model with the same velocity, pressure and temperature for both phases. In such a numerical model, the free surface becomes a thin three dimensional zone. The present method has at least three advantages: (i) the free-surface treatment is completely implicit; (ii) it can naturally handle wave breaking and other topological changes in the flow; (iii) one can easily vary the Equation of States (EOS) of each fluid (in principle, one can even consider tabulated EOS). Moreover, our model is unconditionally hyperbolic for reasonable EOS.Comment: 8 pages, 10 figures; OMAE2008, 27th International Conference on Offshore Mechanics and Arctic Engineering. Other authors papers and animations related to this work can be downloaded from: http://www.cmla.ens-cachan.fr/fileadmin/Membres/dutykh/ The paper was slightly modified according to referees comment

Quality assessment of two- and three-dimensional unstructured meshes and validation of an upwind Euler flow solver

Quality assessment procedures are described for two-dimensional and three-dimensional unstructured meshes. The procedures include measurement of minimum angles, element aspect ratios, stretching, and element skewness. Meshes about the ONERA M6 wing and the Boeing 747 transport configuration are generated using an advancing front method grid generation package of programs. Solutions of Euler's equations for these meshes are obtained at low angle-of-attack, transonic conditions. Results for these cases, obtained as part of a validation study demonstrate the accuracy of an implicit upwind Euler solution algorithm

The VOLNA code for the numerical modelling of tsunami waves: generation, propagation and inundation

A novel tool for tsunami wave modelling is presented. This tool has the potential of being used for operational purposes: indeed, the numerical code \VOLNA is able to handle the complete life-cycle of a tsunami (generation, propagation and run-up along the coast). The algorithm works on unstructured triangular meshes and thus can be run in arbitrary complex domains. This paper contains the detailed description of the finite volume scheme implemented in the code. The numerical treatment of the wet/dry transition is explained. This point is crucial for accurate run-up/run-down computations. Most existing tsunami codes use semi-empirical techniques at this stage, which are not always sufficient for tsunami hazard mitigation. Indeed the decision to evacuate inhabitants is based on inundation maps which are produced with this type of numerical tools. We present several realistic test cases that partially validate our algorithm. Comparisons with analytical solutions and experimental data are performed. Finally the main conclusions are outlined and the perspectives for future research presented.Comment: 47 pages, 27 figures. Other author's papers can be downloaded at http://www.lama.univ-savoie.fr/~dutykh

Generation of unstructured grids and Euler solutions for complex geometries

Algorithms are described for the generation and adaptation of unstructured grids in two and three dimensions, as well as Euler solvers for unstructured grids. The main purpose is to demonstrate how unstructured grids may be employed advantageously for the economic simulation of both geometrically as well as physically complex flow fields

Limiting modular symbols and their fractal geometry

In this paper we use fractal geometry to investigate boundary aspects of the first homology group for finite coverings of the modular surface. We obtain a complete description of algebraically invisible parts of this homology group. More precisely, we first show that for any modular subgroup the geodesic forward dynamic on the associated surface admits a canonical symbolic representation by a finitely irreducible shift space. We then use this representation to derive an `almost complete' multifractal description of the higher--dimensional level sets arising from Manin--Marcolli's limiting modular symbols.Comment: 20 pages, 1 figur

The diffuse Nitsche method: Dirichlet constraints on phase-field boundaries

We explore diffuse formulations of Nitsche's method for consistently imposing Dirichlet boundary conditions on phase-field approximations of sharp domains. Leveraging the properties of the phase-field gradient, we derive the variational formulation of the diffuse Nitsche method by transferring all integrals associated with the Dirichlet boundary from a geometrically sharp surface format in the standard Nitsche method to a geometrically diffuse volumetric format. We also derive conditions for the stability of the discrete system and formulate a diffuse local eigenvalue problem, from which the stabilization parameter can be estimated automatically in each element. We advertise metastable phase-field solutions of the Allen-Cahn problem for transferring complex imaging data into diffuse geometric models. In particular, we discuss the use of mixed meshes, that is, an adaptively refined mesh for the phase-field in the diffuse boundary region and a uniform mesh for the representation of the physics-based solution fields. We illustrate accuracy and convergence properties of the diffuse Nitsche method and demonstrate its advantages over diffuse penalty-type methods. In the context of imaging based analysis, we show that the diffuse Nitsche method achieves the same accuracy as the standard Nitsche method with sharp surfaces, if the inherent length scales, i.e., the interface width of the phase-field, the voxel spacing and the mesh size, are properly related. We demonstrate the flexibility of the new method by analyzing stresses in a human vertebral body

Advances in the particle finite element method for fluid-structure interaction problems

We present a general formulation for analysis of fluid-structure interaction problems using the particle finite element method (PFEM). The key feature of the PFEM is the use of a Lagrangian description to model the motion of nodes (particles) in both the fluid and the structure domains. Nodes are thus viewed as particles which can freely move and even separate from the main analysis domain representing, for instance, the effect of water drops. A mesh connects the nodes defining the discretized domain where the governing equations, expressed in an integral from, are solved as in the standard FEM. The necessary stabilization for dealing with the incompressibility of the fluid is introduced via the finite calculus (FIC) method. A fractional step scheme for the transient coupled fluid-structure solution is described. Examples of application of the PFEM to solve a number of fluid-structure interaction problems involving large motions of the free surface and splashing of waves are presented

Modeling bed erosion in free surface flows by the particle finite element method

We present a general formulation for modeling bed erosion in free surface flows using the particle finite element method (PFEM). The key feature of the PFEM is the use of an updated Lagrangian description to model the motion of nodes (particles) in domains containing fluid and solid subdomains. Nodes are viewed as material points (called particles) which can freely move and even separate from the fluid and solid subdomains representing, for instance, the effect of water drops or soil/rock particles. A mesh connects the nodes defining the discretized domain in the fluid and solid regions where the governing equations, expressed in an integral form, are solved as in the standard FEM. The necessary stabilization for dealing with the incompressibility of the fluid is introduced via the finite calculus (FIC) method. An incremental iterative scheme for the solution of the nonlinear transient coupled fluid-structure problem is described. The erosion mechanism is modeled by releasing the material adjacent to the bed surface according to the frictional work generated by the fluid shear stresses. The released bed material is subsequently transported by the fluid flow. Examples of application of the PFEM to solve a number of bed erosion problems involving large motions of the free surface and splashing of waves are presented