Mapping applications onto FPGA-centric clusters

High Performance Computing (HPC) is becoming increasingly important throughout science and engineering as ever more complex problems must be solved through computational simulations. In these large computational applications, the latency of communication between processing nodes is often the key factor that limits performance. An emerging alternative computer architecture that addresses the latency problem is the FPGA-centric cluster (FCC); in these systems, the devices (FPGAs) are directly interconnected and thus many layers of hardware and software are avoided. The result can be scalability not currently achievable with other technologies. In FCCs, FPGAs serve multiple functions: accelerator, network interface card (NIC), and router. Moreover, because FPGAs are configurable, there is substantial opportunity to tailor the router hardware to the application; previous work has demonstrated that such application-aware configuration can effect a substantial improvement in hardware efficiency. One constraint of FCCs is that it is convenient for their interconnect to be static, direct, and have a two or three dimensional mesh topology. Thus, applications that are naturally of a different dimensionality (have a different logical topology) from that of the FCC must be remapped to obtain optimal performance. In this thesis we study various aspects of the mapping problem for FCCs. There are two major research thrusts. The first is finding the optimal mapping of logical to physical topology. This problem has received substantial attention by both the theory community, where topology mapping is referred to as graph embedding, and by the High Performance Computing (HPC) community, where it is a question of process placement. We explore the implications of the different mapping strategies on communication behavior in FCCs, especially on resulting load imbalance. The second major research thrust is built around the hypothesis that applications that need to be remapped (due to differing logical and physical topologies) will have different optimal router configurations from those applications that do not. For example, due to remapping, some virtual or physical communication links may have little occupancy; therefore fewer resources should be allocated to them. Critical here is the creation of a new set of parameterized hardware features that can be configured to best handle load imbalances caused by remapping. These two thrusts form a codesign loop: certain mapping algorithms may be differentially optimal due to application-aware router reconfiguration that accounts for this mapping. This thesis has four parts. The first part introduces the background and previous work related to communication in general and, in particular, how it is implemented in FCCs. We build on previous work on application-aware router configuration. The second part introduces topology mapping mechanisms including those derived from graph embeddings and a greedy algorithm commonly used in HPC. In the third part, topology mappings are evaluated for performance and imbalance; we note that different mapping strategies lead to different imbalances both in the overall network and in each node. The final part introduces reconfigure router design that allocates resources based on different imbalance situations caused by different mapping behaviors

High-performance and hardware-aware computing: proceedings of the second International Workshop on New Frontiers in High-performance and Hardware-aware Computing (HipHaC\u2711), San Antonio, Texas, USA, February 2011 ; (in conjunction with HPCA-17)

High-performance system architectures are increasingly exploiting heterogeneity. The HipHaC workshop aims at combining new aspects of parallel, heterogeneous, and reconfigurable microprocessor technologies with concepts of high-performance computing and, particularly, numerical solution methods. Compute- and memory-intensive applications can only benefit from the full hardware potential if all features on all levels are taken into account in a holistic approach

Design Space Exploration of Accelerators for Warehouse Scale Computing

With Moore’s law grinding to a halt, accelerators are one of the ways that new silicon can improve performance, and they are already a key component in modern datacenters. Accelerators are integrated circuits that implement parts of an application with the objective of higher energy efficiency compared to execution on a standard general purpose CPU. Many accelerators can target any particular workload, generally with a wide range of performance, and costs such as area or power. Exploring these design choices, called Design Space Exploration (DSE), is a crucial step in trying to find the most efficient accelerator design, the one that produces the largest reduction of the total cost of ownership. This work aims to improve this design space exploration phase for accelerators and to avoid pitfalls in the process. This dissertation supports the thesis that early design choices – including the level of specialization – are critical for accelerator development and therefore require benchmarks reflective of production workloads. We present three studies that support this thesis. First, we show how to benchmark datacenter applications by creating a benchmark for large video sharing infrastructures. Then, we present two studies focused on accelerators for analytical query processing. The first is an analysis on the impact of Network on Chip specialization while the second analyses the impact of the level of specialization. The first part of this dissertation introduces vbench: a video transcoding benchmark tailored to the growing video-as-a-service market. Video transcoding is not accurately represented in current computer architecture benchmarks such as SPEC or PARSEC. Despite posing a big computational burden for cloud video providers, such as YouTube and Facebook, it is not included in cloud benchmarks such as CloudSuite. Using vbench, we found that the microarchitectural profile of video transcoding is highly dependent on the input video, that SIMD extensions provide limited benefits, and that commercial hardware transcoders impose tradeoffs that are not ideal for cloud video providers. Our benchmark should spur architectural innovations for this critical workload. This work shows how to benchmark a real world warehouse scale application and the possible pitfalls in case of a mischaracterization. When considering accelerators for the different, but no less important, application of analytical query processing, design space exploration plays a critical role. We analyzed the Q100, a class of accelerators for this application domain, using TPC-H as the reference benchmark. We found that the hardware computational blocks have to be tailored to the requirements of the application, but also the Network on Chip (NoC) can be specialized. We developed an algorithm capable of producing more effective Q100 designs by tailoring the NoC to the communication requirements of the system. Our algorithm is capable of producing designs that are Pareto optimal compared to standard NoC topologies. This shows how NoC specialization is highly effective for accelerators and it should be an integral part of design space exploration for large accelerators’ designs. The third part of this dissertation analyzes the impact of the level of specialization, e.g. using an ASIC or Coarse Grain Reconfigurable Architecture (CGRA) implementation, on an accelerator performance. We developed a CGRA architecture capable of executing SQL query plans. We compare this architecture against Q100, an ASIC that targets the same class of workloads. Despite being less specialized, this programmable architecture shows comparable performance to the Q100 given an area and power budget. Resource usage explains this counterintuitive result, since a well programmed, homogeneous array of resources is able to more effectively harness silicon for the workload at hand. This suggests that a balanced accelerator research portfolio must include alternative programmable architectures – and their software stacks

On Multicast in Asynchronous Networks-on-Chip: Techniques, Architectures, and FPGA Implementation

In this era of exascale computing, conventional synchronous design techniques are facing unprecedented challenges. The consumer electronics market is replete with many-core systems in the range of 16 cores to thousands of cores on chip, integrating multi-billion transistors. However, with this ever increasing complexity, the traditional design approaches are facing key issues such as increasing chip power, process variability, aging, thermal problems, and scalability. An alternative paradigm that has gained significant interest in the last decade is asynchronous design. Asynchronous designs have several potential advantages: they are naturally energy proportional, burning power only when active, do not require complex clock distribution, are robust to different forms of variability, and provide ease of composability for heterogeneous platforms. Networks-on-chip (NoCs) is an interconnect paradigm that has been introduced to deal with the ever-increasing system complexity. NoCs provide a distributed, scalable, and efficient interconnect solution for today’s many-core systems. Moreover, NoCs are a natural match with asynchronous design techniques, as they separate communication infrastructure and timing from the computational elements. To this end, globally-asynchronous locally-synchronous (GALS) systems that interconnect multiple processing cores, operating at different clock speeds, using an asynchronous NoC, have gained significant interest. While asynchronous NoCs have several advantages, they also face a key challenge of supporting new types of traffic patterns. Once such pattern is multicast communication, where a source sends packets to arbitrary number of destinations. Multicast is not only common in parallel computing, such as for cache coherency, but also for emerging areas such as neuromorphic computing. This important capability has been largely missing from asynchronous NoCs. This thesis introduces several efficient multicast solutions for these interconnects. In particular, techniques, and network architectures are introduced to support high-performance and low-power multicast. Two leading network topologies are the focus: a variant mesh-of-trees (MoT) and a 2D mesh. In addition, for a more realistic implementation and analysis, as well as significantly advancing the field of asynchronous NoCs, this thesis also targets synthesis of these NoCs on commercial FPGAs. While there has been significant advances in FPGA technologies, there has been only limited research on implementing asynchronous NoCs on FPGAs. To this end, a systematic computeraided design (CAD) methodology has been introduced to efficiently and safely map asynchronous NoCs on FPGAs. Overall, this thesis makes the following three contributions. The first contribution is a multicast solution for a variant MoT network topology. This topology consists of simple low-radix switches, and has been used in high-performance computing platforms. A novel local speculation technique is introduced, where a subset of the network’s switches are speculative that always broadcast every packet. These switches are very simple and have high performance. Speculative switches are surrounded by non-speculative ones that route packets based on their destinations and also throttle any redundant copies created by the former. This hybrid network architecture achieved significant performance and power benefits over other multicast approaches. The second contribution is a multicast solution for a 2D-mesh topology, which is more complex with higher-radix switches and also is more commonly used. A novel continuous-time replication strategy is introduced to optimize the critical multi-way forking operation of a multicast transmission. In this technique, a multicast packet is first stored in an input port of a switch, from where it is sent through distinct output ports towards different destinations concurrently, at each output’s own rate and in continuous time. This strategy is shown to have significant latency and energy benefits over an approach that performs multicast using multiple distinct serial unicasts to each destination. Finally, a systematic CAD methodology is introduced to synthesize asynchronous NoCs on commercial FPGAs. A two-fold goal is targeted: correctness and high performance. For ease of implementation, only existing FPGA synthesis tools are used. Moreover, since asynchronous NoCs involve special asynchronous components, a comprehensive guide is introduced to map these elements correctly and efficiently. Two asynchronous NoC switches are synthesized using the proposed approach on a leading Xilinx FPGA in 28 nm: one that only handles unicast, and the other that also supports multicast. Both showed significant energy benefits with some performance gains over a state-of-the-art synchronous switch

High performance communication on reconfigurable clusters

High Performance Computing (HPC) has matured to where it is an essential third pillar, along with theory and experiment, in most domains of science and engineering. Communication latency is a key factor that is limiting the performance of HPC, but can be addressed by integrating communication into accelerators. This integration allows accelerators to communicate with each other without CPU interactions, and even bypassing the network stack. Field Programmable Gate Arrays (FPGAs) are the accelerators that currently best integrate communication with computation. The large number of Multi-gigabit Transceivers (MGTs) on most high-end FPGAs can provide high-bandwidth and low-latency inter-FPGA connections. Additionally, the reconfigurable FPGA fabric enables tight coupling between computation kernel and network interface. Our thesis is that an application-aware communication infrastructure for a multi-FPGA system makes substantial progress in solving the HPC communication bottleneck. This dissertation aims to provide an application-aware solution for communication infrastructure for FPGA-centric clusters. Specifically, our solution demonstrates application-awareness across multiple levels in the network stack, including low-level link protocols, router microarchitectures, routing algorithms, and applications. We start by investigating the low-level link protocol and the impact of its latency variance on performance. Our results demonstrate that, although some link jitter is always present, we can still assume near-synchronous communication on an FPGA-cluster. This provides the necessary condition for statically-scheduled routing. We then propose two novel router microarchitectures for two different kinds of workloads: a wormhole Virtual Channel (VC)-based router for workloads with dynamic communication, and a statically-scheduled Virtual Output Queueing (VOQ)-based router for workloads with static communication. For the first (VC-based) router, we propose a framework that generates application-aware router configurations. Our results show that, by adding application-awareness into router configuration, the network performance of FPGA clusters can be substantially improved. For the second (VOQ-based) router, we propose a novel offline collective routing algorithm. This shows a significant advantage over a state-of-the-art collective routing algorithm. We apply our communication infrastructure to a critical strong-scaling HPC kernel, the 3D FFT. The experimental results demonstrate that the performance of our design is faster than that on CPUs and GPUs by at least one order of magnitude (achieving strong scaling for the target applications). Surprisingly, the FPGA cluster performance is similar to that of an ASIC-cluster. We also implement the 3D FFT on another multi-FPGA platform: the Microsoft Catapult II cloud. Its performance is also comparable or superior to CPU and GPU HPC clusters. The second application we investigate is Molecular Dynamics Simulation (MD). We model MD on both FPGA clouds and clusters. We find that combining processing and general communication in the same device leads to extremely promising performance and the prospect of MD simulations well into the us/day range with a commodity cloud

A Survey on Reconfigurable System-on-Chips

The requirements for high performance and low power consumption are becoming more and more inevitable when designing modern embedded systems, especially for the next generation multi-mode multimedia or communication standards. Ultra large-scale integration reconfigurable System-on-Chips (SoCs) have been proposed to achieve not only better performance and lower energy consumption but also higher flexibility and versatility in comparison with the conventional architectures. The unique characteristic of such systems is integration of many types of heterogeneous reconfigurable processing fabrics based on a Network-on-Chip. This paper analyzes and emphasizes the key research trends of the reconfigurable System-on-Chips (SoCs). Firstly, the emerging hardware architecture of SoCs is highlighted. Afterwards, the key issues of designing the reconfigurable SoCs are discussed, with the focus on the challenges when designing reconfigurable hardware fabrics and reconfigurable Network-on-Chips. Finally, some state-of-the-art reconfigurable SoCs are briefly discussed

An FPGA implementation of an investigative many-core processor, Fynbos : in support of a Fortran autoparallelising software pipeline

Includes bibliographical references.In light of the power, memory, ILP, and utilisation walls facing the computing industry, this work examines the hypothetical many-core approach to finding greater compute performance and efficiency. In order to achieve greater efficiency in an environment in which Moore’s law continues but TDP has been capped, a means of deriving performance from dark and dim silicon is needed. The many-core hypothesis is one approach to exploiting these available transistors efficiently. As understood in this work, it involves trading in hardware control complexity for hundreds to thousands of parallel simple processing elements, and operating at a clock speed sufficiently low as to allow the efficiency gains of near threshold voltage operation. Performance is there- fore dependant on exploiting a new degree of fine-grained parallelism such as is currently only found in GPGPUs, but in a manner that is not as restrictive in application domain range. While removing the complex control hardware of traditional CPUs provides space for more arithmetic hardware, a basic level of control is still required. For a number of reasons this work chooses to replace this control largely with static scheduling. This pushes the burden of control primarily to the software and specifically the compiler, rather not to the programmer or to an application specific means of control simplification. An existing legacy tool chain capable of autoparallelising sequential Fortran code to the degree of parallelism necessary for many-core exists. This work implements a many-core architecture to match it. Prototyping the design on an FPGA, it is possible to examine the real world performance of the compiler-architecture system to a greater degree than simulation only would allow. Comparing theoretical peak performance and real performance in a case study application, the system is found to be more efficient than any other reviewed, but to also significantly under perform relative to current competing architectures. This failing is apportioned to taking the need for simple hardware too far, and an inability to implement static scheduling mitigating tactics due to lack of support for such in the compiler