Exploiting a perdurantist foundational ontology and graph database for semantic data integration

This thesis was submitted for the degree of Doctor of Philosophy and awarded by Brunel University London.The view of reality that is inherent to perdurantist philosophical ontologies, often termed four dimensional (4D) ontologies, has not been widely adopted within the mainstream of information system design practice. However, as the closed world of enterprise systems is opened to Internet scale Semantic Web and Open Data information sources, there is a need to better understand the semantics of both internal and external data and how they can be integrated. Philosophical foundational ontologies can help establish this understanding and there is, therefore, an emerging need to research how they can be applied to the problem of semantic data integration. Therefore, a prime objective of this research was to develop a framework through which to apply a 4D foundational ontology and a graph database to the problem of semantic data integration, and to assess the effectiveness of the approach. The research employed design science, a methodology which is applicable to undertaking research within information systems as it encompasses methods through which the research can be undertaken and the resultant artefacts evaluated. This methodology has a number of discrete stages: problem awareness; a core design-build-evaluate iterative cycle through which the research is conducted; and a conclusion stage. The design science research was conducted through the development of a number of artefacts, the prime being the 4D-Semantic Extract Load (4D-SETL) framework. The effectiveness of the framework was assessed by applying it to semantically interpret and integrate a number of large scale datasets and to instantiate a prototype graph database warehouse to persist the resultant ontology. A series of technical experiments confirmed that directly reflecting the model patterns of 4D ontology within a prototype data warehouse proved an effective means of both structuring and semantically integrating complex datasets and that the artefacts produced by 4D-SETL could function at scale. Through illustrative scenario, the effectiveness of the approach is described in relation to the ability of the framework to address a number of weaknesses in current approaches. Furthermore the major advantages of the 4D-SETL are elaborated; which include ability of the framework is to combine foundational, domain and instance level ontological models in a single coherent system that dispensed with much of the translation normally undertaken between conceptual, logical and physical data models. Additionally, adopting a perdurantist realist foundational ontology provided a clear means of establishing and maintaining the identity of physical objects as their constituent temporal and spatial parts unfold over the course of tim

Kollaboratives Reengineering und Modularisieren von Softwaresystemen

Software systems evolve over their lifetime. Changing requirements make it inevitable for developers to modify and extend the underlying code base. Specific requirements emerge in the context of open source software where everybody can contribute and requirements can change over time. In particular, research software is often not structured with a maintainable and extensible architecture. Furthermore, often databases are employed for retrieving, storing, and processing application data. Insufficient knowledge of the actual structure and behavior of such software systems and related databases can entail further challenges. Thus, understanding these software systems embodies a crucial task, which needs to be addressed in an appropriate way to face inevitable challenges while performing software changes. Approaches based on alternative display and interaction concepts can support this task by offering a more immersive user experience. In this thesis, we introduce three complementary approaches to support the evolution and particularly understanding of software systems in different aspects. Our main contributions are (i) an approach named CORAL for enabling collaborative reengineering and modularization of software systems, (ii) a gesture-based, collaborative, and multi-user-featuring Virtual Reality approach named ExplorViz VR for the software city metaphor, and (iii) a database behavior live-visualization approach named RACCOON for database comprehension of software systems. An extensive case study shows that our CORAL approach is capable of supporting reengineering and modularization processes. Furthermore, several lab experiments demonstrate the high usability, and efficiency and effectiveness for solving comprehension tasks when using the visualization within our multi-user VR approach ExplorViz VR. All implementations are available as open-source software on www.explorviz.net. Additionally, we provide an extensive experimental package of our latest VR evaluation to facilitate the verifiability and reproducibility of our results

Automating Software Development for Mobile Computing Platforms

Mobile devices such as smartphones and tablets have become ubiquitous in today\u27s computing landscape. These devices have ushered in entirely new populations of users, and mobile operating systems are now outpacing more traditional desktop systems in terms of market share. The applications that run on these mobile devices (often referred to as apps ) have become a primary means of computing for millions of users and, as such, have garnered immense developer interest. These apps allow for unique, personal software experiences through touch-based UIs and a complex assortment of sensors. However, designing and implementing high quality mobile apps can be a difficult process. This is primarily due to challenges unique to mobile development including change-prone APIs and platform fragmentation, just to name a few. in this dissertation we develop techniques that aid developers in overcoming these challenges by automating and improving current software design and testing practices for mobile apps. More specifically, we first introduce a technique, called Gvt, that improves the quality of graphical user interfaces (GUIs) for mobile apps by automatically detecting instances where a GUI was not implemented to its intended specifications. Gvt does this by constructing hierarchal models of mobile GUIs from metadata associated with both graphical mock-ups (i.e., created by designers using photo-editing software) and running instances of the GUI from the corresponding implementation. Second, we develop an approach that completely automates prototyping of GUIs for mobile apps. This approach, called ReDraw, is able to transform an image of a mobile app GUI into runnable code by detecting discrete GUI-components using computer vision techniques, classifying these components into proper functional categories (e.g., button, dropdown menu) using a Convolutional Neural Network (CNN), and assembling these components into realistic code. Finally, we design a novel approach for automated testing of mobile apps, called CrashScope, that explores a given android app using systematic input generation with the intrinsic goal of triggering crashes. The GUI-based input generation engine is driven by a combination of static and dynamic analyses that create a model of an app\u27s GUI and targets common, empirically derived root causes of crashes in android apps. We illustrate that the techniques presented in this dissertation represent significant advancements in mobile development processes through a series of empirical investigations, user studies, and industrial case studies that demonstrate the effectiveness of these approaches and the benefit they provide developers

Streamlining code smells: Using collective intelligence and visualization

Context. Code smells are seen as major source of technical debt and, as such, should be detected and removed. Code smells have long been catalogued with corresponding mitigating solutions called refactoring operations. However, while the latter are supported in current IDEs (e.g., Eclipse), code smells detection scaffolding has still many limitations. Researchers argue that the subjectiveness of the code smells detection process is a major hindrance to mitigate the problem of smells-infected code. Objective. This thesis presents a new approach to code smells detection that we have called CrowdSmelling and the results of a validation experiment for this approach. The latter is based on supervised machine learning techniques, where the wisdom of the crowd (of software developers) is used to collectively calibrate code smells detection algorithms, thereby lessening the subjectivity issue. Method. In the context of three consecutive years of a Software Engineering course, a total “crowd” of around a hundred teams, with an average of three members each, classified the presence of 3 code smells (Long Method, God Class, and Feature Envy) in Java source code. These classifications were the basis of the oracles used for training six machine learning algorithms. Over one hundred models were generated and evaluated to determine which machine learning algorithms had the best performance in detecting each of the aforementioned code smells. Results. Good performances were obtained for God Class detection (ROC=0.896 for Naive Bayes) and Long Method detection (ROC=0.870 for AdaBoostM1), but much lower for Feature Envy (ROC=0.570 for Random Forrest). Conclusions. Obtained results suggest that Crowdsmelling is a feasible approach for the detection of code smells, but further validation experiments are required to cover more code smells and to increase external validityContexto. Os cheiros de código são a principal causa de dívida técnica (technical debt), como tal, devem ser detectados e removidos. Os cheiros de código já foram há muito tempo catalogados juntamente com as correspondentes soluções mitigadoras chamadas operações de refabricação (refactoring). No entanto, embora estas últimas sejam suportadas nas IDEs actuais (por exemplo, Eclipse), a deteção de cheiros de código têm ainda muitas limitações. Os investigadores argumentam que a subjectividade do processo de deteção de cheiros de código é um dos principais obstáculo à mitigação do problema da qualidade do código. Objectivo. Esta tese apresenta uma nova abordagem à detecção de cheiros de código, a que chamámos CrowdSmelling, e os resultados de uma experiência de validação para esta abordagem. A nossa abordagem de CrowdSmelling baseia-se em técnicas de aprendizagem automática supervisionada, onde a sabedoria da multidão (dos programadores de software) é utilizada para calibrar colectivamente algoritmos de detecção de cheiros de código, diminuindo assim a questão da subjectividade. Método. Em três anos consecutivos, no âmbito da Unidade Curricular de Engenharia de Software, uma "multidão", num total de cerca de uma centena de equipas, com uma média de três membros cada, classificou a presença de 3 cheiros de código (Long Method, God Class, and Feature Envy) em código fonte Java. Estas classificações foram a base dos oráculos utilizados para o treino de seis algoritmos de aprendizagem automática. Mais de cem modelos foram gerados e avaliados para determinar quais os algoritmos de aprendizagem de máquinas com melhor desempenho na detecção de cada um dos cheiros de código acima mencionados. Resultados. Foram obtidos bons desempenhos na detecção do God Class (ROC=0,896 para Naive Bayes) e na detecção do Long Method (ROC=0,870 para AdaBoostM1), mas muito mais baixos para Feature Envy (ROC=0,570 para Random Forrest). Conclusões. Os resultados obtidos sugerem que o Crowdsmelling é uma abordagem viável para a detecção de cheiros de código, mas são necessárias mais experiências de validação para cobrir mais cheiros de código e para aumentar a validade externa