Visual Integration of Data and Model Space in Ensemble Learning

Ensembles of classifier models typically deliver superior performance and can outperform single classifier models given a dataset and classification task at hand. However, the gain in performance comes together with the lack in comprehensibility, posing a challenge to understand how each model affects the classification outputs and where the errors come from. We propose a tight visual integration of the data and the model space for exploring and combining classifier models. We introduce a workflow that builds upon the visual integration and enables the effective exploration of classification outputs and models. We then present a use case in which we start with an ensemble automatically selected by a standard ensemble selection algorithm, and show how we can manipulate models and alternative combinations.Comment: 8 pages, 7 picture

Recovering complete and draft population genomes from metagenome datasets.

Assembly of metagenomic sequence data into microbial genomes is of fundamental value to improving our understanding of microbial ecology and metabolism by elucidating the functional potential of hard-to-culture microorganisms. Here, we provide a synthesis of available methods to bin metagenomic contigs into species-level groups and highlight how genetic diversity, sequencing depth, and coverage influence binning success. Despite the computational cost on application to deeply sequenced complex metagenomes (e.g., soil), covarying patterns of contig coverage across multiple datasets significantly improves the binning process. We also discuss and compare current genome validation methods and reveal how these methods tackle the problem of chimeric genome bins i.e., sequences from multiple species. Finally, we explore how population genome assembly can be used to uncover biogeographic trends and to characterize the effect of in situ functional constraints on the genome-wide evolution

A Learning-based Approach to Exploiting Sensing Diversity in Performance Critical Sensor Networks

Wireless sensor networks for human health monitoring, military surveillance, and disaster warning all have stringent accuracy requirements for detecting and classifying events while maximizing system lifetime. to meet high accuracy requirements and maximize system lifetime, we must address sensing diversity: sensing capability differences among both heterogeneous and homogeneous sensors in a specific deployment. Existing approaches either ignore sensing diversity entirely and assume all sensors have similar capabilities or attempt to overcome sensing diversity through calibration. Instead, we use machine learning to take advantage of sensing differences among heterogeneous sensors to provide high accuracy and energy savings for performance critical applications.;In this dissertation, we provide five major contributions that exploit the nuances of specific sensor deployments to increase application performance. First, we demonstrate that by using machine learning for event detection, we can explore the sensing capability of a specific deployment and use only the most capable sensors to meet user accuracy requirements. Second, we expand our diversity exploiting approach to detect multiple events using a distributed manner. Third, we address sensing diversity in body sensor networks, providing a practical, user friendly solution for activity recognition. Fourth, we further increase accuracy and energy savings in body sensor networks by sharing sensing resources among neighboring body sensor networks. Lastly, we provide a learning-based approach for forwarding event detection decisions to data sinks in an environment with mobile sensor nodes