53,729 research outputs found
Efficient mining of discriminative molecular fragments
Frequent pattern discovery in structured data is receiving
an increasing attention in many application areas of sciences. However, the computational complexity and the large amount of data to be explored often make the sequential algorithms unsuitable. In this context high performance distributed computing becomes a very interesting and promising approach. In this paper we present a parallel formulation of the frequent subgraph mining problem to discover interesting patterns in molecular compounds. The application is characterized by a highly irregular tree-structured computation. No estimation is available for task workloads, which show a power-law distribution in a wide range. The proposed approach allows dynamic resource aggregation and provides fault and latency tolerance. These features make the distributed application suitable for multi-domain heterogeneous environments, such as computational Grids. The distributed application has been evaluated on the well known National Cancer Institute’s HIV-screening dataset
A Contribution to Secure the Routing Protocol "Greedy Perimeter Stateless Routing" Using a Symmetric Signature-Based AES and MD5 Hash
This work presents a contribution to secure the routing protocol GPSR (Greedy
Perimeter Stateless Routing) for vehicular ad hoc networks, we examine the
possible attacks against GPSR and security solutions proposed by different
research teams working on ad hoc network security. Then, we propose a solution
to secure GPSR packet by adding a digital signature based on symmetric
cryptography generated using the AES algorithm and the MD5 hash function more
suited to a mobile environment
In-Network Outlier Detection in Wireless Sensor Networks
To address the problem of unsupervised outlier detection in wireless sensor
networks, we develop an approach that (1) is flexible with respect to the
outlier definition, (2) computes the result in-network to reduce both bandwidth
and energy usage,(3) only uses single hop communication thus permitting very
simple node failure detection and message reliability assurance mechanisms
(e.g., carrier-sense), and (4) seamlessly accommodates dynamic updates to data.
We examine performance using simulation with real sensor data streams. Our
results demonstrate that our approach is accurate and imposes a reasonable
communication load and level of power consumption.Comment: Extended version of a paper appearing in the Int'l Conference on
Distributed Computing Systems 200
DHLP 1&2: Giraph based distributed label propagation algorithms on heterogeneous drug-related networks
Background and Objective: Heterogeneous complex networks are large graphs
consisting of different types of nodes and edges. The knowledge extraction from
these networks is complicated. Moreover, the scale of these networks is
steadily increasing. Thus, scalable methods are required. Methods: In this
paper, two distributed label propagation algorithms for heterogeneous networks,
namely DHLP-1 and DHLP-2 have been introduced. Biological networks are one type
of the heterogeneous complex networks. As a case study, we have measured the
efficiency of our proposed DHLP-1 and DHLP-2 algorithms on a biological network
consisting of drugs, diseases, and targets. The subject we have studied in this
network is drug repositioning but our algorithms can be used as general methods
for heterogeneous networks other than the biological network. Results: We
compared the proposed algorithms with similar non-distributed versions of them
namely MINProp and Heter-LP. The experiments revealed the good performance of
the algorithms in terms of running time and accuracy.Comment: Source code available for Apache Giraph on Hadoo
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