A General Framework for Sound and Complete Floyd-Hoare Logics

This paper presents an abstraction of Hoare logic to traced symmetric monoidal categories, a very general framework for the theory of systems. Our abstraction is based on a traced monoidal functor from an arbitrary traced monoidal category into the category of pre-orders and monotone relations. We give several examples of how our theory generalises usual Hoare logics (partial correctness of while programs, partial correctness of pointer programs), and provide some case studies on how it can be used to develop new Hoare logics (run-time analysis of while programs and stream circuits).Comment: 27 page

Interest-based RDF Update Propagation

Many LOD datasets, such as DBpedia and LinkedGeoData, are voluminous and process large amounts of requests from diverse applications. Many data products and services rely on full or partial local LOD replications to ensure faster querying and processing. While such replicas enhance the flexibility of information sharing and integration infrastructures, they also introduce data duplication with all the associated undesirable consequences. Given the evolving nature of the original and authoritative datasets, to ensure consistent and up-to-date replicas frequent replacements are required at a great cost. In this paper, we introduce an approach for interest-based RDF update propagation, which propagates only interesting parts of updates from the source to the target dataset. Effectively, this enables remote applications to `subscribe' to relevant datasets and consistently reflect the necessary changes locally without the need to frequently replace the entire dataset (or a relevant subset). Our approach is based on a formal definition for graph-pattern-based interest expressions that is used to filter interesting parts of updates from the source. We implement the approach in the iRap framework and perform a comprehensive evaluation based on DBpedia Live updates, to confirm the validity and value of our approach.Comment: 16 pages, Keywords: Change Propagation, Dataset Dynamics, Linked Data, Replicatio

Resolving sets for Johnson and Kneser graphs

A set of vertices $S$ in a graph $G$ is a {\em resolving set} for $G$ if, for any two vertices $u,v$, there exists $x\in S$ such that the distances $d(u,x) \neq d(v,x)$. In this paper, we consider the Johnson graphs $J(n,k)$ and Kneser graphs $K(n,k)$, and obtain various constructions of resolving sets for these graphs. As well as general constructions, we show that various interesting combinatorial objects can be used to obtain resolving sets in these graphs, including (for Johnson graphs) projective planes and symmetric designs, as well as (for Kneser graphs) partial geometries, Hadamard matrices, Steiner systems and toroidal grids.Comment: 23 pages, 2 figures, 1 tabl

Locating regions in a sequence under density constraints

Several biological problems require the identification of regions in a sequence where some feature occurs within a target density range: examples including the location of GC-rich regions, identification of CpG islands, and sequence matching. Mathematically, this corresponds to searching a string of 0s and 1s for a substring whose relative proportion of 1s lies between given lower and upper bounds. We consider the algorithmic problem of locating the longest such substring, as well as other related problems (such as finding the shortest substring or a maximal set of disjoint substrings). For locating the longest such substring, we develop an algorithm that runs in O(n) time, improving upon the previous best-known O(n log n) result. For the related problems we develop O(n log log n) algorithms, again improving upon the best-known O(n log n) results. Practical testing verifies that our new algorithms enjoy significantly smaller time and memory footprints, and can process sequences that are orders of magnitude longer as a result.Comment: 17 pages, 8 figures; v2: minor revisions, additional explanations; to appear in SIAM Journal on Computin

Strong forms of linearization for Hopf monoids in species

A vector species is a functor from the category of finite sets with bijections to vector spaces; informally, one can view this as a sequence of $S_n$-modules. A Hopf monoid (in the category of vector species) consists of a vector species with unit, counit, product, and coproduct morphisms satisfying several compatibility conditions, analogous to a graded Hopf algebra. We say that a Hopf monoid is strongly linearized if it has a "basis" preserved by its product and coproduct in a certain sense. We prove several equivalent characterizations of this property, and show that any strongly linearized Hopf monoid which is commutative and cocommutative possesses four bases which one can view as analogues of the classical bases of the algebra of symmetric functions. There are natural functors which turn Hopf monoids into graded Hopf algebras, and applying these functors to strongly linearized Hopf monoids produces several notable families of Hopf algebras. For example, in this way we give a simple unified construction of the Hopf algebras of superclass functions attached to the maximal unipotent subgroups of three families of classical Chevalley groups.Comment: 35 pages; v2: corrected some typos, fixed attribution for Theorem 5.4.4; v3: some corrections, slight revisions, added references; v4: updated references, numbering of results modified to conform with published version, final versio