Physics-Informed Computer Vision: A Review and Perspectives

Incorporation of physical information in machine learning frameworks are opening and transforming many application domains. Here the learning process is augmented through the induction of fundamental knowledge and governing physical laws. In this work we explore their utility for computer vision tasks in interpreting and understanding visual data. We present a systematic literature review of formulation and approaches to computer vision tasks guided by physical laws. We begin by decomposing the popular computer vision pipeline into a taxonomy of stages and investigate approaches to incorporate governing physical equations in each stage. Existing approaches in each task are analyzed with regard to what governing physical processes are modeled, formulated and how they are incorporated, i.e. modify data (observation bias), modify networks (inductive bias), and modify losses (learning bias). The taxonomy offers a unified view of the application of the physics-informed capability, highlighting where physics-informed learning has been conducted and where the gaps and opportunities are. Finally, we highlight open problems and challenges to inform future research. While still in its early days, the study of physics-informed computer vision has the promise to develop better computer vision models that can improve physical plausibility, accuracy, data efficiency and generalization in increasingly realistic applications

Improving nuclear medicine with deep learning and explainability: two real-world use cases in parkinsonian syndrome and safety dosimetry

Computer vision in the area of medical imaging has rapidly improved during recent years as a consequence of developments in deep learning and explainability algorithms. In addition, imaging in nuclear medicine is becoming increasingly sophisticated, with the emergence of targeted radiotherapies that enable treatment and imaging on a molecular level (“theranostics”) where radiolabeled targeted molecules are directly injected into the bloodstream. Based on our recent work, we present two use-cases in nuclear medicine as follows: first, the impact of automated organ segmentation required for personalized dosimetry in patients with neuroendocrine tumors and second, purely data-driven identification and verification of brain regions for diagnosis of Parkinson’s disease. Convolutional neural network was used for automated organ segmentation on computed tomography images. The segmented organs were used for calculation of the energy deposited into the organ-at-risk for patients treated with a radiopharmaceutical. Our method resulted in faster and cheaper dosimetry and only differed by 7% from dosimetry performed by two medical physicists. The identification of brain regions, however was analyzed on dopamine-transporter single positron emission tomography images using convolutional neural network and explainability, i.e., layer-wise relevance propagation algorithm. Our findings confirm that the extra-striatal brain regions, i.e., insula, amygdala, ventromedial prefrontal cortex, thalamus, anterior temporal cortex, superior frontal lobe, and pons contribute to the interpretation of images beyond the striatal regions. In current common diagnostic practice, however, only the striatum is the reference region, while extra-striatal regions are neglected. We further demonstrate that deep learning-based diagnosis combined with explainability algorithm can be recommended to support interpretation of this image modality in clinical routine for parkinsonian syndromes, with a total computation time of three seconds which is compatible with busy clinical workflow. Overall, this thesis shows for the first time that deep learning with explainability can achieve results competitive with human performance and generate novel hypotheses, thus paving the way towards improved diagnosis and treatment in nuclear medicine

Signal Processing Using Non-invasive Physiological Sensors

Non-invasive biomedical sensors for monitoring physiological parameters from the human body for potential future therapies and healthcare solutions. Today, a critical factor in providing a cost-effective healthcare system is improving patients' quality of life and mobility, which can be achieved by developing non-invasive sensor systems, which can then be deployed in point of care, used at home or integrated into wearable devices for long-term data collection. Another factor that plays an integral part in a cost-effective healthcare system is the signal processing of the data recorded with non-invasive biomedical sensors. In this book, we aimed to attract researchers who are interested in the application of signal processing methods to different biomedical signals, such as an electroencephalogram (EEG), electromyogram (EMG), functional near-infrared spectroscopy (fNIRS), electrocardiogram (ECG), galvanic skin response, pulse oximetry, photoplethysmogram (PPG), etc. We encouraged new signal processing methods or the use of existing signal processing methods for its novel application in physiological signals to help healthcare providers make better decisions

Entropy in Image Analysis II

Image analysis is a fundamental task for any application where extracting information from images is required. The analysis requires highly sophisticated numerical and analytical methods, particularly for those applications in medicine, security, and other fields where the results of the processing consist of data of vital importance. This fact is evident from all the articles composing the Special Issue "Entropy in Image Analysis II", in which the authors used widely tested methods to verify their results. In the process of reading the present volume, the reader will appreciate the richness of their methods and applications, in particular for medical imaging and image security, and a remarkable cross-fertilization among the proposed research areas

Machine Learning Methods for functional Near Infrared Spectroscopy

Identification of user state is of interest in a wide range of disciplines that fall under the umbrella of human machine interaction. Functional Near Infra-Red Spectroscopy (fNIRS) device is a relatively new device that enables inference of brain activity through non-invasively pulsing infra-red light into the brain. The fNIRS device is particularly useful as it has a better spatial resolution than the Electroencephalograph (EEG) device that is most commonly used in Human Computer Interaction studies under ecologically valid settings. But this key advantage of fNIRS device is underutilized in current literature in the fNIRS domain. We propose machine learning methods that capture this spatial nature of the human brain activity using a novel preprocessing method that uses `Region of Interest\u27 based feature extraction. Experiments show that this method outperforms the F1 score achieved previously in classifying `low\u27 vs `high\u27 valence state of a user. We further our analysis by applying a Convolutional Neural Network (CNN) to the fNIRS data, thus preserving the spatial structure of the data and treating the data similar to a series of images to be classified. Going further, we use a combination of CNN and Long Short-Term Memory (LSTM) to capture the spatial and temporal behavior of the fNIRS data, thus treating it similar to a video classification problem. We show that this method improves upon the accuracy previously obtained by valence classification methods using EEG or fNIRS devices. Finally, we apply the above model to a problem in classifying combined task-load and performance in an across-subject, across-task scenario of a Human Machine Teaming environment in order to achieve optimal productivity of the system

Integrated navigation and visualisation for skull base surgery

Skull base surgery involves the management of tumours located on the underside of the brain and the base of the skull. Skull base tumours are intricately associated with several critical neurovascular structures making surgery challenging and high risk. Vestibular schwannoma (VS) is a benign nerve sheath tumour arising from one of the vestibular nerves and is the commonest pathology encountered in skull base surgery. The goal of modern VS surgery is maximal tumour removal whilst preserving neurological function and maintaining quality of life but despite advanced neurosurgical techniques, facial nerve paralysis remains a potentially devastating complication of this surgery. This thesis describes the development and integration of various advanced navigation and visualisation techniques to increase the precision and accuracy of skull base surgery. A novel Diffusion Magnetic Resonance Imaging (dMRI) acquisition and processing protocol for imaging the facial nerve in patients with VS was developed to improve delineation of facial nerve preoperatively. An automated Artificial Intelligence (AI)-based framework was developed to segment VS from MRI scans. A user-friendly navigation system capable of integrating dMRI and tractography of the facial nerve, 3D tumour segmentation and intraoperative 3D ultrasound was developed and validated using an anatomically-realistic acoustic phantom model of a head including the skull, brain and VS. The optical properties of five types of human brain tumour (meningioma, pituitary adenoma, schwannoma, low- and high-grade glioma) and nine different types of healthy brain tissue were examined across a wavelength spectrum of 400 nm to 800 nm in order to inform the development of an Intraoperative Hypserpectral Imaging (iHSI) system. Finally, functional and technical requirements of an iHSI were established and a prototype system was developed and tested in a first-in-patient study

Imaging Sensors and Applications

In past decades, various sensor technologies have been used in all areas of our lives, thus improving our quality of life. In particular, imaging sensors have been widely applied in the development of various imaging approaches such as optical imaging, ultrasound imaging, X-ray imaging, and nuclear imaging, and contributed to achieve high sensitivity, miniaturization, and real-time imaging. These advanced image sensing technologies play an important role not only in the medical field but also in the industrial field. This Special Issue covers broad topics on imaging sensors and applications. The scope range of imaging sensors can be extended to novel imaging sensors and diverse imaging systems, including hardware and software advancements. Additionally, biomedical and nondestructive sensing applications are welcome

Decoding attentional load in visual perception: a signal processing approach

Previous research has established that visual perception tasks high in attentional load (or ‘perceptual load’, defined operationally to include either a larger number of items or a greater perceptual processing demand) result in reduced perceptual sensitivity and cortical response for visual stimuli outside the focus of attention. However, there are three challenges facing the load theory of attention today. The first is to describe a neural mechanism by which load-induced perceptual deficits are explained; the second is to clarify the concept of perceptual load and develop a method for estimating the load induced by a visual task a priori, without recourse to measures of secondary perceptual effects; and the third is to extend the study of attentional load to natural, real-world, visual tasks. In this thesis we employ signal processing and machine learning approaches to address these challenges. In Chapters 3 and 4 it is shown that high perceptual load degrades the perception of orientation by modulating the tuning curves of neural populations in early visual cortex. The combination of tuning curve modulations reported is unique to perceptual load, inducing broadened tuning as well as reductions in tuning amplitude and overall neural activity, and so provides a novel low-level mechanism for behaviourally relevant failures of vision such as inattentional blindness. In Chapter 5, a predictive model of perceptual load during the task of driving is produced. The high variation in perceptual demands during real-world driving allow the construction of a direct fine-scale mapping between high-resolution natural imagery, captured from a driver's point-of-view, and induced perceptual load. The model therefore constitutes the first system able to produce a priori estimates of load directly from visual characteristics of a natural task, extending research into the antecedents of perceptual load beyond the realm of austere laboratory displays. Taken together, the findings of this thesis represent major theoretical advances into both the causes and effects of high perceptual load

Advanced Biometrics with Deep Learning

Biometrics, such as fingerprint, iris, face, hand print, hand vein, speech and gait recognition, etc., as a means of identity management have become commonplace nowadays for various applications. Biometric systems follow a typical pipeline, that is composed of separate preprocessing, feature extraction and classification. Deep learning as a data-driven representation learning approach has been shown to be a promising alternative to conventional data-agnostic and handcrafted pre-processing and feature extraction for biometric systems. Furthermore, deep learning offers an end-to-end learning paradigm to unify preprocessing, feature extraction, and recognition, based solely on biometric data. This Special Issue has collected 12 high-quality, state-of-the-art research papers that deal with challenging issues in advanced biometric systems based on deep learning. The 12 papers can be divided into 4 categories according to biometric modality; namely, face biometrics, medical electronic signals (EEG and ECG), voice print, and others