Discrete time piecewise affine models of genetic regulatory networks

We introduce simple models of genetic regulatory networks and we proceed to the mathematical analysis of their dynamics. The models are discrete time dynamical systems generated by piecewise affine contracting mappings whose variables represent gene expression levels. When compared to other models of regulatory networks, these models have an additional parameter which is identified as quantifying interaction delays. In spite of their simplicity, their dynamics presents a rich variety of behaviours. This phenomenology is not limited to piecewise affine model but extends to smooth nonlinear discrete time models of regulatory networks. In a first step, our analysis concerns general properties of networks on arbitrary graphs (characterisation of the attractor, symbolic dynamics, Lyapunov stability, structural stability, symmetries, etc). In a second step, focus is made on simple circuits for which the attractor and its changes with parameters are described. In the negative circuit of 2 genes, a thorough study is presented which concern stable (quasi-)periodic oscillations governed by rotations on the unit circle -- with a rotation number depending continuously and monotonically on threshold parameters. These regular oscillations exist in negative circuits with arbitrary number of genes where they are most likely to be observed in genetic systems with non-negligible delay effects.Comment: 34 page

Control and dynamics of a flexible spacecraft during stationkeeping maneuvers

A case study of a spacecraft having flexible solar arrays is presented. A stationkeeping attitude control mode using both earth and rate gyro reference signals and a flexible vehicle dynamics modeling and implementation is discussed. The control system is designed to achieve both pointing accuracy and structural mode stability during stationkeeping maneuvers. Reduction of structural mode interactions over the entire mode duration is presented. The control mode using a discrete time observer structure is described to show the convergence of the spacecraft attitude transients during Delta-V thrusting maneuvers without preloading thrusting bias to the onboard control processor. The simulation performance using the three axis, body stabilized nonlinear dynamics is provided. The details of a five body dynamics model are discussed. The spacecraft is modeled as a central rigid body having cantilevered flexible antennas, a pair of flexible articulated solar arrays, and to gimballed momentum wheels. The vehicle is free to undergo unrestricted rotations and translations relative to inertial space. A direct implementation of the equations of motion is compared to an indirect implementation that uses a symbolic manipulation software to generate rigid body equations

Symmetry Decomposition of Chaotic Dynamics

Discrete symmetries of dynamical flows give rise to relations between periodic orbits, reduce the dynamics to a fundamental domain, and lead to factorizations of zeta functions. These factorizations in turn reduce the labor and improve the convergence of cycle expansions for classical and quantum spectra associated with the flow. In this paper the general formalism is developed, with the $N$-disk pinball model used as a concrete example and a series of physically interesting cases worked out in detail.Comment: CYCLER Paper 93mar01

Symbolic analysis for some planar piecewise linear maps

In this paper a class of linear maps on the 2-torus and some planar piecewise isometries are discussed. For these discontinuous maps, by introducing codings underlying the map operations, symbolic descriptions of the dynamics and admissibility conditions for itineraries are given, and explicit expressions in terms of the codings for periodic points are presented.Comment: 4 Figure