Niching particle swarm optimization based euclidean distance and hierarchical clustering for multimodal optimization

Abstract : Multimodal optimization is still one of the most challenging tasks in the evolutionary computation field, when multiple global and local optima need to be effectively and efficiently located. In this paper, a niching Particle Swarm Optimization (PSO) based Euclidean Distance and Hierarchical Clustering (EDHC) for multimodal optimization is proposed. This technique first uses the Euclidean distance based PSO algorithm to perform preliminarily search. In this phase, the particles are rapidly clustered around peaks. Secondly, hierarchical clustering is applied to identify and concentrate the particles distributed around each peak to finely search as a whole. Finally, a small world network topology is adopted in each niche to improve the exploitation ability of the algorithm. At the end of this paper, the proposed EDHC-PSO algorithm is applied to the Traveling Salesman Problems (TSP) after being discretized. The experiments demonstrate that the proposed method outperforms existing niching techniques on benchmark problems, and is effective for TSP

Discrete particle swarm optimization for combinatorial problems with innovative applications.

Master of Science in Computer Science. University of KwaZulu-Natal, Durban 2016.Abstract available in PDF file

The AddACO: A bio-inspired modified version of the ant colony optimization algorithm to solve travel salesman problems

The Travel Salesman Problem (TSP) consists in finding the minimal-length closed tour that connects the entire group of nodes of a given graph. We propose to solve such a combinatorial optimization problem with the AddACO algorithm: it is a version of the Ant Colony Optimization method that is characterized by a modified probabilistic law at the basis of the exploratory movement of the artificial insects. In particular, the ant decisional rule is here set to amount in a linear convex combination of competing behavioral stimuli and has therefore an additive form (hence the name of our algorithm), rather than the canonical multiplicative one. The AddACO intends to address two conceptual shortcomings that characterize classical ACO methods: (i) the population of artificial insects is in principle allowed to simultaneously minimize/maximize all migratory guidance cues (which is in implausible from a biological/ecological point of view) and (ii) a given edge of the graph has a null probability to be explored if at least one of the movement trait is therein equal to zero, i.e., regardless the intensity of the others (this in principle reduces the exploratory potential of the ant colony). Three possible variants of our method are then specified: the AddACO-V1, which includes pheromone trail and visibility as insect decisional variables, and the AddACO-V2 and the AddACO-V3, which in turn add random effects and inertia, respectively, to the two classical migratory stimuli. The three versions of our algorithm are tested on benchmark middle-scale TPS instances, in order to assess their performance and to find their optimal parameter setting. The best performing variant is finally applied to large-scale TSPs, compared to the naive Ant-Cycle Ant System, proposed by Dorigo and colleagues, and evaluated in terms of quality of the solutions, computational time, and convergence speed. The aim is in fact to show that the proposed transition probability, as long as its conceptual advantages, is competitive from a performance perspective, i.e., if it does not reduce the exploratory capacity of the ant population w.r.t. the canonical one (at least in the case of selected TSPs). A theoretical study of the asymptotic behavior of the AddACO is given in the appendix of the work, whose conclusive section contains some hints for further improvements of our algorithm, also in the perspective of its application to other optimization problems

Multi‐Objective Hyper‐Heuristics

Multi‐objective hyper‐heuristics is a search method or learning mechanism that operates over a fixed set of low‐level heuristics to solve multi‐objective optimization problems by controlling and combining the strengths of those heuristics. Although numerous papers on hyper‐heuristics have been published and several studies are still underway, most research has focused on single‐objective optimization. Work on hyper‐heuristics for multi‐objective optimization remains limited. This chapter draws attention to this area of research to help researchers and PhD students understand and reuse these methods. It also provides the basic concepts of multi‐objective optimization and hyper‐heuristics to facilitate a better understanding of the related research areas, in addition to exploring hyper‐heuristic methodologies that address multi‐objective optimization. Some design issues related to the development of hyper‐heuristic framework for multi‐objective optimization are discussed. The chapter concludes with a case study of multi‐objective selection hyper‐heuristics and its application on a real‐world problem

A survey on metaheuristics for stochastic combinatorial optimization

Metaheuristics are general algorithmic frameworks, often nature-inspired, designed to solve complex optimization problems, and they are a growing research area since a few decades. In recent years, metaheuristics are emerging as successful alternatives to more classical approaches also for solving optimization problems that include in their mathematical formulation uncertain, stochastic, and dynamic information. In this paper metaheuristics such as Ant Colony Optimization, Evolutionary Computation, Simulated Annealing, Tabu Search and others are introduced, and their applications to the class of Stochastic Combinatorial Optimization Problems (SCOPs) is thoroughly reviewed. Issues common to all metaheuristics, open problems, and possible directions of research are proposed and discussed. In this survey, the reader familiar to metaheuristics finds also pointers to classical algorithmic approaches to optimization under uncertainty, and useful informations to start working on this problem domain, while the reader new to metaheuristics should find a good tutorial in those metaheuristics that are currently being applied to optimization under uncertainty, and motivations for interest in this fiel

DNA BARCODING DENGAN ALGORITMA PARTICLE SWARM OPTIMIZATION MENGGUNAKAN APACHE SPARK SQL

Terdapat salah satu tahap dalam DNA barcoding yang masih menggunakan metode manual seperti similarity check yang mengakibatkan tahap ini ketelitian dan waktu yang cukup lama. Data sekuens DNA makhluk hidup merupakan data yang sangat banyak pada bidang biologi. Untuk itu penelitian in membuat sebuah model komputasi untuk mendapatkan DNA barcode secara cepat dan efektif dengan mengimplementasikan algoritma particle swarm optimization pada big data platform yaitu Apache Hadoop dan Apache Spark . Data yang digunakan pada penelitian kali ini adalah data RNA SARS-CoV-2. Hasil dari program yang dibangun berupa DNA barcode yang ditemukan dari sampel yang ada berserta waktu yang dibutuhkan untuk menyelesaikan kalkulasi. Dilakukan 2 skenario pengujian, skenario pertama yaitu dengan menggunakan 4 cores dan beberapa worker nodes dan yang kedua yaitu penggunaan cluster dengan 2 worker nodes dan beberapa cores. Hasil dari penelitian ini membuktikan bahwa model komputasi yang dibangun pada big data platform menunjukan adanya perkembangan fitur dan percepatan terhadap penelitian terdahulu. There is one stage in DNA barcoding that still uses manual methods such as similarity check which results in this stage of accuracy and quite a long time. DNA sequence data of living things is very much data in the field of biology. For this reason, this research creates a computational model to obtain DNA barcodes quickly and effectively by implementing the particle swarm optimization algorithm on the big data platform, Apache Hadoop, and Apache Spark. The data used in this study is SARS-CoV-2 RNA data. The results of the program that were built consisted of DNA barcodes found from the existing sample of time needed to complete calculations. The results of this study indicate that there is a significant acceleration between standalone and big data platform with 2 experimental scenarios. The first scenario is to use 4 cores and some worker nodes and the second is to use a cluster with 2 worker nodes and several cores. This research proves that the computational model built on the big data platform shows the development of features and acceleration of previous research

Metaheuristic Optimization Frameworks: a Survey and Benchmarking

This paper performs an unprecedented comparative study of Metaheuristic optimization frameworks. As criteria for comparison a set of 271 features grouped in 30 characteristics and 6 areas has been selected. These features include the different metaheuristic techniques covered, mechanisms for solution encoding, constraint handling, neighborhood specification, hybridization, parallel and distributed computation, software engineering best practices, documentation and user interface, etc. A metric has been defined for each feature so that the scores obtained by a framework are averaged within each group of features, leading to a final average score for each framework. Out of 33 frameworks ten have been selected from the literature using well-defined filtering criteria, and the results of the comparison are analyzed with the aim of identifying improvement areas and gaps in specific frameworks and the whole set. Generally speaking, a significant lack of support has been found for hyper-heuristics, and parallel and distributed computing capabilities. It is also desirable to have a wider implementation of some Software Engineering best practices. Finally, a wider support for some metaheuristics and hybridization capabilities is needed

Community Detection in Networks using Bio-inspired Optimization: Latest Developments, New Results and Perspectives with a Selection of Recent Meta-Heuristics

Detecting groups within a set of interconnected nodes is a widely addressed prob- lem that can model a diversity of applications. Unfortunately, detecting the opti- mal partition of a network is a computationally demanding task, usually conducted by means of optimization methods. Among them, randomized search heuristics have been proven to be efficient approaches. This manuscript is devoted to pro- viding an overview of community detection problems from the perspective of bio-inspired computation. To this end, we first review the recent history of this research area, placing emphasis on milestone studies contributed in the last five years. Next, we present an extensive experimental study to assess the performance of a selection of modern heuristics over weighted directed network instances. Specifically, we combine seven global search heuristics based on two different similarity metrics and eight heterogeneous search operators designed ad-hoc. We compare our methods with six different community detection techniques over a benchmark of 17 Lancichinetti-Fortunato-Radicchi network instances. Ranking statistics of the tested algorithms reveal that the proposed methods perform com- petitively, but the high variability of the rankings leads to the main conclusion: no clear winner can be declared. This finding aligns with community detection tools available in the literature that hinge on a sequential application of different algorithms in search for the best performing counterpart. We end our research by sharing our envisioned status of this area, for which we identify challenges and opportunities which should stimulate research efforts in years to come