63,163 research outputs found
On directed information theory and Granger causality graphs
Directed information theory deals with communication channels with feedback.
When applied to networks, a natural extension based on causal conditioning is
needed. We show here that measures built from directed information theory in
networks can be used to assess Granger causality graphs of stochastic
processes. We show that directed information theory includes measures such as
the transfer entropy, and that it is the adequate information theoretic
framework needed for neuroscience applications, such as connectivity inference
problems.Comment: accepted for publications, Journal of Computational Neuroscienc
Justification of Logarithmic Loss via the Benefit of Side Information
We consider a natural measure of relevance: the reduction in optimal
prediction risk in the presence of side information. For any given loss
function, this relevance measure captures the benefit of side information for
performing inference on a random variable under this loss function. When such a
measure satisfies a natural data processing property, and the random variable
of interest has alphabet size greater than two, we show that it is uniquely
characterized by the mutual information, and the corresponding loss function
coincides with logarithmic loss. In doing so, our work provides a new
characterization of mutual information, and justifies its use as a measure of
relevance. When the alphabet is binary, we characterize the only admissible
forms the measure of relevance can assume while obeying the specified data
processing property. Our results naturally extend to measuring causal influence
between stochastic processes, where we unify different causal-inference
measures in the literature as instantiations of directed information
Disentangling causal webs in the brain using functional Magnetic Resonance Imaging: A review of current approaches
In the past two decades, functional Magnetic Resonance Imaging has been used
to relate neuronal network activity to cognitive processing and behaviour.
Recently this approach has been augmented by algorithms that allow us to infer
causal links between component populations of neuronal networks. Multiple
inference procedures have been proposed to approach this research question but
so far, each method has limitations when it comes to establishing whole-brain
connectivity patterns. In this work, we discuss eight ways to infer causality
in fMRI research: Bayesian Nets, Dynamical Causal Modelling, Granger Causality,
Likelihood Ratios, LiNGAM, Patel's Tau, Structural Equation Modelling, and
Transfer Entropy. We finish with formulating some recommendations for the
future directions in this area
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