1,809 research outputs found
Dimensionality reduction for k-distance applied to persistent homology
Given a set P of n points and a constant k, we are interested in computing the persistent homology of the Čech filtration of P for the k-distance, and investigate the effectiveness of dimensionality reduction for this problem, answering an open question of Sheehy [Proc. SoCG, 2014]. We show that any linear transformation that preserves pairwise distances up to a (1±ε) multiplicative factor, must preserve the persistent homology of the Čech filtration up to a factor of (1-ε)^{-1}. Our results also show that the Vietoris-Rips and Delaunay filtrations for the k-distance, as well as the Čech filtration for the approximate k-distance of Buchet et al. are preserved up to a (1±ε) factor. We also prove extensions of our main theorem, for point sets (i) lying in a region of bounded Gaussian width or (ii) on a low-dimensional manifold, obtaining the target dimension bounds of Lotz [Proc. Roy. Soc. , 2019] and Clarkson [Proc. SoCG, 2008 ] respectively
Topological data analysis of contagion maps for examining spreading processes on networks
Social and biological contagions are influenced by the spatial embeddedness
of networks. Historically, many epidemics spread as a wave across part of the
Earth's surface; however, in modern contagions long-range edges -- for example,
due to airline transportation or communication media -- allow clusters of a
contagion to appear in distant locations. Here we study the spread of
contagions on networks through a methodology grounded in topological data
analysis and nonlinear dimension reduction. We construct "contagion maps" that
use multiple contagions on a network to map the nodes as a point cloud. By
analyzing the topology, geometry, and dimensionality of manifold structure in
such point clouds, we reveal insights to aid in the modeling, forecast, and
control of spreading processes. Our approach highlights contagion maps also as
a viable tool for inferring low-dimensional structure in networks.Comment: Main Text and Supplementary Informatio
Dimension Detection with Local Homology
Detecting the dimension of a hidden manifold from a point sample has become
an important problem in the current data-driven era. Indeed, estimating the
shape dimension is often the first step in studying the processes or phenomena
associated to the data. Among the many dimension detection algorithms proposed
in various fields, a few can provide theoretical guarantee on the correctness
of the estimated dimension. However, the correctness usually requires certain
regularity of the input: the input points are either uniformly randomly sampled
in a statistical setting, or they form the so-called
-sample which can be neither too dense nor too sparse.
Here, we propose a purely topological technique to detect dimensions. Our
algorithm is provably correct and works under a more relaxed sampling
condition: we do not require uniformity, and we also allow Hausdorff noise. Our
approach detects dimension by determining local homology. The computation of
this topological structure is much less sensitive to the local distribution of
points, which leads to the relaxation of the sampling conditions. Furthermore,
by leveraging various developments in computational topology, we show that this
local homology at a point can be computed \emph{exactly} for manifolds
using Vietoris-Rips complexes whose vertices are confined within a local
neighborhood of . We implement our algorithm and demonstrate the accuracy
and robustness of our method using both synthetic and real data sets
Learning Algebraic Varieties from Samples
We seek to determine a real algebraic variety from a fixed finite subset of
points. Existing methods are studied and new methods are developed. Our focus
lies on aspects of topology and algebraic geometry, such as dimension and
defining polynomials. All algorithms are tested on a range of datasets and made
available in a Julia package
Stable comparison of multidimensional persistent homology groups with torsion
The present lack of a stable method to compare persistent homology groups with torsion is a relevant problem in current research about Persistent Homology and its applications in Pattern Recognition. In this paper we introduce a pseudo-distance d_T that represents a possible solution to this problem. Indeed, d_T is a pseudo-distance between multidimensional persistent homology groups with coefficients in an Abelian group, hence possibly having torsion. Our main theorem proves the stability of the new pseudo-distance with respect to the change of the filtering function, expressed both with respect to the max-norm and to the natural pseudo-distance between topological spaces endowed with vector-valued filtering functions. Furthermore, we prove a result showing the relationship between d_T and the matching distance in the 1-dimensional case, when the homology coefficients are taken in a field and hence the comparison can be made
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