5,579 research outputs found
A Simple Iterative Algorithm for Parsimonious Binary Kernel Fisher Discrimination
By applying recent results in optimization theory variously known as optimization transfer or majorize/minimize algorithms, an algorithm for binary, kernel, Fisher discriminant analysis is introduced that makes use of a non-smooth penalty on the coefficients to provide a parsimonious solution. The problem is converted into a smooth optimization that can be solved iteratively with no greater overhead than iteratively re-weighted least-squares. The result is simple, easily programmed and is shown to perform, in terms of both accuracy and parsimony, as well as or better than a number of leading machine learning algorithms on two well-studied and substantial benchmarks
Feature Augmentation via Nonparametrics and Selection (FANS) in High Dimensional Classification
We propose a high dimensional classification method that involves
nonparametric feature augmentation. Knowing that marginal density ratios are
the most powerful univariate classifiers, we use the ratio estimates to
transform the original feature measurements. Subsequently, penalized logistic
regression is invoked, taking as input the newly transformed or augmented
features. This procedure trains models equipped with local complexity and
global simplicity, thereby avoiding the curse of dimensionality while creating
a flexible nonlinear decision boundary. The resulting method is called Feature
Augmentation via Nonparametrics and Selection (FANS). We motivate FANS by
generalizing the Naive Bayes model, writing the log ratio of joint densities as
a linear combination of those of marginal densities. It is related to
generalized additive models, but has better interpretability and computability.
Risk bounds are developed for FANS. In numerical analysis, FANS is compared
with competing methods, so as to provide a guideline on its best application
domain. Real data analysis demonstrates that FANS performs very competitively
on benchmark email spam and gene expression data sets. Moreover, FANS is
implemented by an extremely fast algorithm through parallel computing.Comment: 30 pages, 2 figure
Support vector machine for functional data classification
In many applications, input data are sampled functions taking their values in
infinite dimensional spaces rather than standard vectors. This fact has complex
consequences on data analysis algorithms that motivate modifications of them.
In fact most of the traditional data analysis tools for regression,
classification and clustering have been adapted to functional inputs under the
general name of functional Data Analysis (FDA). In this paper, we investigate
the use of Support Vector Machines (SVMs) for functional data analysis and we
focus on the problem of curves discrimination. SVMs are large margin classifier
tools based on implicit non linear mappings of the considered data into high
dimensional spaces thanks to kernels. We show how to define simple kernels that
take into account the unctional nature of the data and lead to consistent
classification. Experiments conducted on real world data emphasize the benefit
of taking into account some functional aspects of the problems.Comment: 13 page
Parsimonious Kernel Fisher Discrimination
By applying recent results in optimization transfer, a new algorithm for kernel Fisher Discriminant Analysis is provided that makes use of a non-smooth penalty on the coefficients to provide a parsimonious solution. The algorithm is simple, easily programmed and is shown to perform as well as or better than a number of leading machine learning algorithms on a substantial benchmark. It is then applied to a set of extreme small-sample-size problems in virtual screening where it is found to be less accurate than a currently leading approach but is still comparable in a number of cases
A Noise-Robust Fast Sparse Bayesian Learning Model
This paper utilizes the hierarchical model structure from the Bayesian Lasso
in the Sparse Bayesian Learning process to develop a new type of probabilistic
supervised learning approach. The hierarchical model structure in this Bayesian
framework is designed such that the priors do not only penalize the unnecessary
complexity of the model but will also be conditioned on the variance of the
random noise in the data. The hyperparameters in the model are estimated by the
Fast Marginal Likelihood Maximization algorithm which can achieve sparsity, low
computational cost and faster learning process. We compare our methodology with
two other popular learning models; the Relevance Vector Machine and the
Bayesian Lasso. We test our model on examples involving both simulated and
empirical data, and the results show that this approach has several performance
advantages, such as being fast, sparse and also robust to the variance in
random noise. In addition, our method can give out a more stable estimation of
variance of random error, compared with the other methods in the study.Comment: 15 page
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