Development of text mining tools for information retrieval from patents

Biomedical literature is composed of an ever increasing number of publications in natural language. Patents are a relevant fraction of those, being important sources of information due to all the curated data from the granting process. However, their unstructured data turns the search of information a challenging task. To surpass that, Biomedical text mining (BioTM) creates methodologies to search and structure that data. Several BioTM techniques can be applied to patents. From those, Information Retrieval is the process where relevant data is obtained from collections of documents. In this work, a patent pipeline was developed and integrated intoFEDER -Federación Española de Enfermedades Raras(NORTE-01-0145-FEDER-000004)info:eu-repo/semantics/publishedVersio

Development of text mining tools for information retrieval and extraction from patents

[Excerpt] Biomedical literature is composed of a large and ever increasing number of publications, written in natural language. Patents are a relevant fraction of these publications, considered important sources of information due to all the curated information available in the documents, from the granting process. Although being real technological libraries, their unstructured data turns the search of information within these documents a challenging task. Biomedical text mining is a scientific field that explores this task, creating methodologies to search and structure the information in the biomedical literature. [...]info:eu-repo/semantics/publishedVersio

Opportunity Identification for New Product Planning: Ontological Semantic Patent Classification

Intelligence tools have been developed and applied widely in many different areas in engineering, business and management. Many commercialized tools for business intelligence are available in the market. However, no practically useful tools for technology intelligence are available at this time, and very little academic research in technology intelligence methods has been conducted to date. Patent databases are the most important data source for technology intelligence tools, but patents inherently contain unstructured data. Consequently, extracting text data from patent databases, converting that data to meaningful information and generating useful knowledge from this information become complex tasks. These tasks are currently being performed very ineffectively, inefficiently and unreliably by human experts. This deficiency is particularly vexing in product planning, where awareness of market needs and technological capabilities is critical for identifying opportunities for new products and services. Total nescience of the text of patents, as well as inadequate, unreliable and untimely knowledge derived from these patents, may consequently result in missed opportunities that could lead to severe competitive disadvantage and potentially catastrophic loss of revenue. The research performed in this dissertation tries to correct the abovementioned deficiency with an approach called patent mining. The research is conducted at Finex, an iron casting company that produces traditional kitchen skillets. To \u27mine\u27 pertinent patents, experts in new product development at Finex modeled one ontology for the required product features and another for the attributes of requisite metallurgical enabling technologies from which new product opportunities for skillets are identified by applying natural language processing, information retrieval, and machine learning (classification) to the text of patents in the USPTO database. Three main scenarios are examined in my research. Regular classification (RC) relies on keywords that are extracted directly from a group of USPTO patents. Ontological classification (OC) relies on keywords that result from an ontology developed by Finex experts, which is evaluated and improved by a panel of external experts. Ontological semantic classification (OSC) uses these ontological keywords and their synonyms, which are extracted from the WordNet database. For each scenario, I evaluate the performance of three classifiers: k-Nearest Neighbor (k-NN), random forest, and Support Vector Machine (SVM). My research shows that OSC is the best scenario and SVM is the best classifier for identifying product planning opportunities, because this combination yields the highest score in metrics that are generally used to measure classification performance in machine learning (e.g., ROC-AUC and F-score). My method also significantly outperforms current practice, because I demonstrate in an experiment that neither the experts at Finex nor the panel of external experts are able to search for and judge relevant patents with any degree of effectiveness, efficiency or reliability. This dissertation provides the rudiments of a theoretical foundation for patent mining, which has yielded a machine learning method that is deployed successfully in a new product planning setting (Finex). Further development of this method could make a significant contribution to management practice by identifying opportunities for new product development that have been missed by the approaches that have been deployed to date

Template Mining for Information Extraction from Digital Documents

published or submitted for publicatio

Development of an information retrieval tool for biomedical patents

Supplementary material associated with this article can be found, in the online version, at doi: 10.1016/j.cmpb.2018.03.012 .Background and objective. The volume of biomedical literature has been increasing in the last years. Patent documents have also followed this trend, being important sources of biomedical knowledge, technical details and curated data, which are put together along the granting process. The field of Biomedical text mining (BioTM) has been creating solutions for the problems posed by the unstructured nature of natural language, which makes the search of information a challenging task. Several BioTM techniques can be applied to patents. From those, Information Retrieval (IR) includes processes where relevant data are obtained from collections of documents. In this work, the main goal was to build a patent pipeline addressing IR tasks over patent repositories to make these documents amenable to BioTM tasks. Methods. The pipeline was developed within @Note2, an open-source computational framework for BioTM, adding a number of modules to the core libraries, including patent metadata and full text retrieval, PDF to text conversion and optical character recognition. Also, user interfaces were developed for the main operations materialized in a new @Note2 plug-in. Results. The integration of these tools in @Note2 opens opportunities to run BioTM tools over patent texts, including tasks from Information Extraction, such as Named Entity Recognition or Relation Extraction. We demonstrated the pipelines main functions with a case study, using an available benchmark dataset from BioCreative challenges. Also, we show the use of the plug-in with a user query related to the production of vanillin. Conclusions. This work makes available all the relevant content from patents to the scientific community, decreasing drastically the time required for this task, and provides graphical interfaces to ease the use of these tools.This work is co-funded by the Programa Operacional Re- gional do Norte, under the “Portugal2020”, through the Euro- pean Regional Development Fund ( ERDF ), within project SISBI- Ref a NORTE-01-0247-FEDER-003381 . This study was also supported by the Portuguese Foundation for Science and Technology (FCT) under the scope of the strategic funding of UID/BIO/04469/2013 unit and COMPETE 2020 (POCI-01- 0145-FEDER-00 6 684) and BioTecNorte operation (NORTE-01-0145- FEDER-0 0 0 0 04) funded by European Regional Development Fund under the scope of Norte2020 - Programa Operacional Regional do Norte.info:eu-repo/semantics/publishedVersio

HiER 2015. Proceedings des 9. Hildesheimer Evaluierungs- und Retrievalworkshop

Die Digitalisierung formt unsere Informationsumwelten. Disruptive Technologien dringen verstärkt und immer schneller in unseren Alltag ein und verändern unser Informations- und Kommunikationsverhalten. Informationsmärkte wandeln sich. Der 9. Hildesheimer Evaluierungs- und Retrievalworkshop HIER 2015 thematisiert die Gestaltung und Evaluierung von Informationssystemen vor dem Hintergrund der sich beschleunigenden Digitalisierung. Im Fokus stehen die folgenden Themen: Digital Humanities, Internetsuche und Online Marketing, Information Seeking und nutzerzentrierte Entwicklung, E-Learning

Editorial for the First Workshop on Mining Scientific Papers: Computational Linguistics and Bibliometrics

The workshop "Mining Scientific Papers: Computational Linguistics and Bibliometrics" (CLBib 2015), co-located with the 15th International Society of Scientometrics and Informetrics Conference (ISSI 2015), brought together researchers in Bibliometrics and Computational Linguistics in order to study the ways Bibliometrics can benefit from large-scale text analytics and sense mining of scientific papers, thus exploring the interdisciplinarity of Bibliometrics and Natural Language Processing (NLP). The goals of the workshop were to answer questions like: How can we enhance author network analysis and Bibliometrics using data obtained by text analytics? What insights can NLP provide on the structure of scientific writing, on citation networks, and on in-text citation analysis? This workshop is the first step to foster the reflection on the interdisciplinarity and the benefits that the two disciplines Bibliometrics and Natural Language Processing can drive from it.Comment: 4 pages, Workshop on Mining Scientific Papers: Computational Linguistics and Bibliometrics at ISSI 201

Patent Analytics Based on Feature Vector Space Model: A Case of IoT

The number of approved patents worldwide increases rapidly each year, which requires new patent analytics to efficiently mine the valuable information attached to these patents. Vector space model (VSM) represents documents as high-dimensional vectors, where each dimension corresponds to a unique term. While originally proposed for information retrieval systems, VSM has also seen wide applications in patent analytics, and used as a fundamental tool to map patent documents to structured data. However, VSM method suffers from several limitations when applied to patent analysis tasks, such as loss of sentence-level semantics and curse-of-dimensionality problems. In order to address the above limitations, we propose a patent analytics based on feature vector space model (FVSM), where the FVSM is constructed by mapping patent documents to feature vectors extracted by convolutional neural networks (CNN). The applications of FVSM for three typical patent analysis tasks, i.e., patents similarity comparison, patent clustering, and patent map generation are discussed. A case study using patents related to Internet of Things (IoT) technology is illustrated to demonstrate the performance and effectiveness of FVSM. The proposed FVSM can be adopted by other patent analysis studies to replace VSM, based on which various big data learning tasks can be performed

Innovation through pertinent patents research based on physical phenomena involved

One can find innovative solutions to complex industrial problems by looking for knowledge in patents. Traditional search using keywords in databases of patents has been widely used. Currently, different computational methods that limit human intervention have been developed. We aim to define a method to improve the search for relevant patents in order to solve industrial problems and specifically to deduce evolution opportunities. The non-automatic, semi-automatic, and automatic search methods use keywords. For a detailed keyword search, we propose as a basis the functional decomposition and the analysis of the physical phenomena involved in the achievement of the function to fulfill. The search for solutions to design a bi-phasic separator in deep offshore shows the method presented in this paper