1,863 research outputs found
Detection-aided liver lesion segmentation using deep learning
A fully automatic technique for segmenting the liver and localizing its
unhealthy tissues is a convenient tool in order to diagnose hepatic diseases
and assess the response to the according treatments. In this work we propose a
method to segment the liver and its lesions from Computed Tomography (CT) scans
using Convolutional Neural Networks (CNNs), that have proven good results in a
variety of computer vision tasks, including medical imaging. The network that
segments the lesions consists of a cascaded architecture, which first focuses
on the region of the liver in order to segment the lesions on it. Moreover, we
train a detector to localize the lesions, and mask the results of the
segmentation network with the positive detections. The segmentation
architecture is based on DRIU, a Fully Convolutional Network (FCN) with side
outputs that work on feature maps of different resolutions, to finally benefit
from the multi-scale information learned by different stages of the network.
The main contribution of this work is the use of a detector to localize the
lesions, which we show to be beneficial to remove false positives triggered by
the segmentation network. Source code and models are available at
https://imatge-upc.github.io/liverseg-2017-nipsws/ .Comment: NIPS 2017 Workshop on Machine Learning for Health (ML4H
Modeling the Intra-class Variability for Liver Lesion Detection using a Multi-class Patch-based CNN
Automatic detection of liver lesions in CT images poses a great challenge for
researchers. In this work we present a deep learning approach that models
explicitly the variability within the non-lesion class, based on prior
knowledge of the data, to support an automated lesion detection system. A
multi-class convolutional neural network (CNN) is proposed to categorize input
image patches into sub-categories of boundary and interior patches, the
decisions of which are fused to reach a binary lesion vs non-lesion decision.
For validation of our system, we use CT images of 132 livers and 498 lesions.
Our approach shows highly improved detection results that outperform the
state-of-the-art fully convolutional network. Automated computerized tools, as
shown in this work, have the potential in the future to support the
radiologists towards improved detection.Comment: To be presented at PatchMI: 3rd International Workshop on Patch-based
Techniques in Medical Imaging, MICCAI 201
A Survey on Deep Learning in Medical Image Analysis
Deep learning algorithms, in particular convolutional networks, have rapidly
become a methodology of choice for analyzing medical images. This paper reviews
the major deep learning concepts pertinent to medical image analysis and
summarizes over 300 contributions to the field, most of which appeared in the
last year. We survey the use of deep learning for image classification, object
detection, segmentation, registration, and other tasks and provide concise
overviews of studies per application area. Open challenges and directions for
future research are discussed.Comment: Revised survey includes expanded discussion section and reworked
introductory section on common deep architectures. Added missed papers from
before Feb 1st 201
Deep Lesion Graphs in the Wild: Relationship Learning and Organization of Significant Radiology Image Findings in a Diverse Large-scale Lesion Database
Radiologists in their daily work routinely find and annotate significant
abnormalities on a large number of radiology images. Such abnormalities, or
lesions, have collected over years and stored in hospitals' picture archiving
and communication systems. However, they are basically unsorted and lack
semantic annotations like type and location. In this paper, we aim to organize
and explore them by learning a deep feature representation for each lesion. A
large-scale and comprehensive dataset, DeepLesion, is introduced for this task.
DeepLesion contains bounding boxes and size measurements of over 32K lesions.
To model their similarity relationship, we leverage multiple supervision
information including types, self-supervised location coordinates and sizes.
They require little manual annotation effort but describe useful attributes of
the lesions. Then, a triplet network is utilized to learn lesion embeddings
with a sequential sampling strategy to depict their hierarchical similarity
structure. Experiments show promising qualitative and quantitative results on
lesion retrieval, clustering, and classification. The learned embeddings can be
further employed to build a lesion graph for various clinically useful
applications. We propose algorithms for intra-patient lesion matching and
missing annotation mining. Experimental results validate their effectiveness.Comment: Accepted by CVPR2018. DeepLesion url adde
Cancer diagnosis using deep learning: A bibliographic review
In this paper, we first describe the basics of the field of cancer diagnosis, which includes steps of cancer diagnosis followed by the typical classification methods used by doctors, providing a historical idea of cancer classification techniques to the readers. These methods include Asymmetry, Border, Color and Diameter (ABCD) method, seven-point detection method, Menzies method, and pattern analysis. They are used regularly by doctors for cancer diagnosis, although they are not considered very efficient for obtaining better performance. Moreover, considering all types of audience, the basic evaluation criteria are also discussed. The criteria include the receiver operating characteristic curve (ROC curve), Area under the ROC curve (AUC), F1 score, accuracy, specificity, sensitivity, precision, dice-coefficient, average accuracy, and Jaccard index. Previously used methods are considered inefficient, asking for better and smarter methods for cancer diagnosis. Artificial intelligence and cancer diagnosis are gaining attention as a way to define better diagnostic tools. In particular, deep neural networks can be successfully used for intelligent image analysis. The basic framework of how this machine learning works on medical imaging is provided in this study, i.e., pre-processing, image segmentation and post-processing. The second part of this manuscript describes the different deep learning techniques, such as convolutional neural networks (CNNs), generative adversarial models (GANs), deep autoencoders (DANs), restricted Boltzmann’s machine (RBM), stacked autoencoders (SAE), convolutional autoencoders (CAE), recurrent neural networks (RNNs), long short-term memory (LTSM), multi-scale convolutional neural network (M-CNN), multi-instance learning convolutional neural network (MIL-CNN). For each technique, we provide Python codes, to allow interested readers to experiment with the cited algorithms on their own diagnostic problems. The third part of this manuscript compiles the successfully applied deep learning models for different types of cancers. Considering the length of the manuscript, we restrict ourselves to the discussion of breast cancer, lung cancer, brain cancer, and skin cancer. The purpose of this bibliographic review is to provide researchers opting to work in implementing deep learning and artificial neural networks for cancer diagnosis a knowledge from scratch of the state-of-the-art achievements
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