DeepCough: A Deep Convolutional Neural Network in A Wearable Cough Detection System

In this paper, we present a system that employs a wearable acoustic sensor and a deep convolutional neural network for detecting coughs. We evaluate the performance of our system on 14 healthy volunteers and compare it to that of other cough detection systems that have been reported in the literature. Experimental results show that our system achieves a classification sensitivity of 95.1% and a specificity of 99.5%.Comment: BioCAS-201

Joint model-based recognition and localization of overlapped acoustic events using a set of distributed small microphone arrays

In the analysis of acoustic scenes, often the occurring sounds have to be detected in time, recognized, and localized in space. Usually, each of these tasks is done separately. In this paper, a model-based approach to jointly carry them out for the case of multiple simultaneous sources is presented and tested. The recognized event classes and their respective room positions are obtained with a single system that maximizes the combination of a large set of scores, each one resulting from a different acoustic event model and a different beamformer output signal, which comes from one of several arbitrarily-located small microphone arrays. By using a two-step method, the experimental work for a specific scenario consisting of meeting-room acoustic events, either isolated or overlapped with speech, is reported. Tests carried out with two datasets show the advantage of the proposed approach with respect to some usual techniques, and that the inclusion of estimated priors brings a further performance improvement.Comment: Computational acoustic scene analysis, microphone array signal processing, acoustic event detectio

Mobile Sensing, Simulation and Machine-learning Techniques: Improving Observations in Public Health

Entering an era where mobile phones equipped with numerous sensors have become an integral part of our lives and wearable devices such as activity trackers are very popular, studying and analyzing the data collected by these devices can give insights to the researchers and policy makers about the ongoing illnesses, outbreaks and public health in general. In this regard, new machine learning techniques can be utilized for population screening, informing centers of disease control and prevention of potential threats and outbreaks. Big data streams if not present, will limit investigating the feasibility of such new techniques in this domain. To overcome this shortcoming, simulation models even if grounded by small-size data can represent a simple platform of the more complicated systems and then be utilized as safe and still precise environments for generating synthetic ground truth big data. The objective of this thesis is to use an agent-based model (ABM) which depicts a city consisting of restaurants, consumers, and an inspector, to investigate the practicability of using smartphones data in the machine-learning component of Hidden Markov Model trained by synthetic ground-truth data generated by the ABM model to detect food-borne related outbreaks and inform the inspector about them. To this end, we also compared the results of such arrangement with traditional outbreak detection methods. We examine this method in different formations and scenarios. As another contribution, we analyzed smart phone data collected through a real world experiment where the participants were using an application Ethica Data on their phones named. This application as the first platform turning smartphones into micro research labs allows passive sensor monitoring and sending over context-dependent surveys. The collected data was later analyzed to get insights into the participants' food consumption patterns. Our results indicate that Hidden Markov Models supplied with smart phone data provide accurate systems for foodborne outbreak detection. The results also support the applicability of smart phone data to obtain information about foodborne diseases. The results also suggest that there are some limitations in using Hidden Markov Models to detect the exact source of outbreaks

Cough Monitoring Through Audio Analysis

The detection of cough events in audio recordings requires the analysis of a significant amount of data as cough is typically monitored continuously over several hours to capture naturally occurring cough events. The recorded data is mostly composed of undesired sound events such as silence, background noise, and speech. To reduce computational costs and to address the ethical concerns raised from the collection of audio data in public environments, the data requires pre-processing prior to any further analysis. Current cough detection algorithms typically use pre-processing methods to remove undesired audio segments from the collected data but do not preserve the privacy of individuals being recorded while monitoring respiratory events. This study reveals the need for an automatic pre-processing method that removes sensitive data from the recording prior to any further analysis to ensure privacy preservation of individuals. Specific characteristics of cough sounds can be used to discard sensitive data from audio recordings at a pre-processing stage, improving privacy preservation, and decreasing ethical concerns when dealing with cough monitoring through audio analysis. We propose a pre-processing algorithm that increases privacy preservation and significantly decreases the amount of data to be analysed, by separating cough segments from other non-cough segments, including speech, in audio recordings. Our method verifies the presence of signal energy in both lower and higher frequency regions and discards segments whose energy concentrates only on one of them. The method is iteratively applied on the same data to increase the percentage of data reduction and privacy preservation. We evaluated the performance of our algorithm using several hours of audio recordings with manually pre-annotated cough and speech events. Our results showed that 5 iterations of the proposed method can discard up to 88.94% of the speech content present in the recordings, allowing for a strong privacy preservation while considerably reducing the amount of data to be further analysed by 91.79%. The data reduction and privacy preservation achievements of the proposed pre-processing algorithm offers the possibility to use larger datasets captured in public environments and would beneficiate all cough detection algorithms by preserving the privacy of subjects and by-stander conversations recorded during cough monitoring

Towards using Cough for Respiratory Disease Diagnosis by leveraging Artificial Intelligence: A Survey

Cough acoustics contain multitudes of vital information about pathomorphological alterations in the respiratory system. Reliable and accurate detection of cough events by investigating the underlying cough latent features and disease diagnosis can play an indispensable role in revitalizing the healthcare practices. The recent application of Artificial Intelligence (AI) and advances of ubiquitous computing for respiratory disease prediction has created an auspicious trend and myriad of future possibilities in the medical domain. In particular, there is an expeditiously emerging trend of Machine learning (ML) and Deep Learning (DL)-based diagnostic algorithms exploiting cough signatures. The enormous body of literature on cough-based AI algorithms demonstrate that these models can play a significant role for detecting the onset of a specific respiratory disease. However, it is pertinent to collect the information from all relevant studies in an exhaustive manner for the medical experts and AI scientists to analyze the decisive role of AI/ML. This survey offers a comprehensive overview of the cough data-driven ML/DL detection and preliminary diagnosis frameworks, along with a detailed list of significant features. We investigate the mechanism that causes cough and the latent cough features of the respiratory modalities. We also analyze the customized cough monitoring application, and their AI-powered recognition algorithms. Challenges and prospective future research directions to develop practical, robust, and ubiquitous solutions are also discussed in detail.Comment: 30 pages, 12 figures, 9 table