Comparison of Resting-State Brain Activation Detected by BOLD, Blood Volume and Blood Flow

Resting-state brain activity has been widely investigated using blood oxygenation level dependent (BOLD) contrast techniques. However, BOLD signal changes reflect a combination of the effects of cerebral blood flow (CBF), cerebral blood volume (CBV), as well as the cerebral metabolic rate of oxygen (CMRO2). In this study, resting-state brain activation was detected and compared using the following techniques: (a) BOLD, using a gradient-echo echo planar imaging (GE-EPI) sequence; (b) CBV-weighted signal, acquired using gradient and spin echo (GRASE) based vascular space occupancy (VASO); and (c) CBF, using pseudo-continuous arterial spin labeling (pCASL). Reliable brain networks were detected using VASO and ASL, including sensorimotor, auditory, primary visual, higher visual, default mode, salience and left/right executive control networks. Differences between the resting-state activation detected with ASL, VASO and BOLD could potentially be due to the different temporal signal-to-noise ratio (tSNR) and the short post-labeling delay (PLD) in ASL, along with differences in the spin-echo readout of VASO. It is also possible that the dynamics of spontaneous fluctuations in BOLD, CBV and CBF could differ due to biological reasons, according to their location within the brain

Effect of prewhitening in resting-state functional near-infrared spectroscopy data

Published: 24 October 2018Near-infrared spectroscopy (NIRS) offers the potential to characterize resting-state functional connectivity (RSFC) in populations that are not easily assessed otherwise, such as young infants. In addition to the advantages of NIRS, one should also consider that the RS-NIRS signal requires specific data preprocessing and analysis. In particular, the RS-NIRS signal shows a colored frequency spectrum, which can be observed as temporal autocorrelation, thereby introducing spurious correlations. To address this issue, prewhitening of the RS-NIRS signal has been recently proposed as a necessary step to remove the signal temporal autocorrelation and therefore reduce false-discovery rates. However, the impact of this step on the analysis of experimental RS-NIRS data has not been thoroughly assessed prior to the present study. Here, the results of a standard preprocessing pipeline in a RS-NIRS dataset acquired in infants are compared with the results after incorporating two different prewhitening algorithms. Our results with a standard preprocessing replicated previous studies. Prewhitening altered RSFC patterns and disrupted the antiphase relationship between oxyhemoglobin and deoxyhemoglobin. We conclude that a better understanding of the effect of prewhitening on RS-NIRS data is still needed before directly considering its incorporation to the standard preprocessing pipeline.This research was possible due to the support of the Basque Government predoctoral grant PRE_2016_2_0188 to Borja Blanco, as well as the support of the Spanish Ministry of Economy and Competitiveness through the project PSI 2014-54512-P, Juan de la Cierva Fellowship (IJCI-2014-20821) and the “Severo Ochoa” Programme for Centres/Units of Excellence in R & D (SEV-2015-490)

Depth-Dependent Physiological Modulators of the BOLD Response in the Human Motor Cortex

This dissertation proposes a set of methods for improving spatial localization of cerebral metabolic changes using functional magnetic resonance imaging (fMRI). Blood oxygen level dependent (BOLD) fMRI estabilished itself as the most frequently used technique for mapping brain activity in humans. It is non-invasive and allows to obtain information about brain oxygenation changes in a few minutes. It was discovered in 1990 and, since then, it contributed enormously to the developments in neuroscientific research. Nevertheless, the BOLD contrast suffers from inherent limitations. This comes from the fact that the observed response is the result of a complex interplay between cerebral blood flow (CBF), cerebral blood volume (CBV) and cerebral metabolic rate of oxygen consumption (CMRO2) and has a strong dependency on baseline blood volume and oxygenation. Therefore, the observed response is mislocalized from the site where the metabolic activity takes place and it is subject to high variability across experiments due to normal brain physiology. Since the peak of BOLD changes can be as much as 4 mm apart from the site of metabolic changes, the problem of spatial mislocalization is particularly constraining at submillimeter resolution. Three methods are proposed in this work in order to overcome this limitation and make data more comparable. The first method involves a modification of an estabilished model for calibration of BOLD responses (the dilution model), in order to render it applicable at higher resolutions. The second method proposes a model-free scaling of the BOLD response, based on spatial normalization by a purely vascular response pattern. The third method takes into account the hypothesis that the cortical vasculature could act as a low-pass filter for BOLD fluctuations as the blood is carried downstream, and investigates differences in frequency composition of cortical laminae. All methods are described and tested on a depth-dependent scale in the human motor cortex

Spatiotemporal dynamics of low frequency fluctuations in bold fMRI

Traditional fMRI utilizes blood oxygenation level dependent (BOLD) contrast to map brain activity. BOLD signal is sensitive to the hemodynamic changes associated with brain activity, and gives an indirect measure of brain activity. Low frequency fluctuations (LFFs) have been observed in the BOLD signal even in the absence of any anesthetic agent, and the correlations between the fluctuations from different brain regions has been used to map functional connectivity in the brain. Most studies involving spontaneous fluctuations in the BOLD signal extract connectivity patterns that show relationships between brain areas that are maintained over the length of the scanning session. The research presented in this document investigates the spatiotemporal dynamics of the BOLD fluctuations to identify common spatiotemporal patterns within a scan. First, the presence of a visually detectable spatiotemporal propagation pattern is demonstrated by utilizing single-slice data with high spatial and temporal resolution. The pattern consists of lateral-medial propagation of BOLD signal, demonstrating the presence of time-varying features in spontaneous BOLD fluctuations. Further, a novel pattern finding algorithm is developed for detecting repeated spatiotemporal patterns in BOLD fMRI data. The algorithm is applied to high temporal resolution T2*-weighted multislice images obtained from rats and humans in the absence of any task or stimulation. In rats, the primary pattern consists of waves of high signal intensity, propagating in a lateral-medial direction across the cortex, replicating the results obtained using visual observation. In humans, the most common spatiotemporal pattern consisted of an alteration between activation of areas comprising the "default-mode" (e.g., posterior cingulate and anterior medial prefrontal cortices) and the "task-positive" (e.g., superior parietal and premotor cortices) networks. Signal propagation from focal starting points is also observed. The pattern finding algorithm is shown to be reasonably insensitive to the variation in user-defined parameters, and the results are consistent within and between subjects. This novel approach for probing the spontaneous network activity of the brain has implications for the interpretation of conventional functional connectivity studies, and may increase the amount of information that can be obtained from neuroimaging data.Ph.D.Committee Chair: Keilholz, Shella; Committee Member: Hu, Xiaoping; Committee Member: Jaeger, Dieter; Committee Member: Sathian, Krish; Committee Member: Schumacher, Eri

Mapping Transient Hyperventilation Induced Alterations with Estimates of the Multi-Scale Dynamics of BOLD Signal

Temporal blood oxygen level dependent (BOLD) contrast signals in functional MRI during rest may be characterized by power spectral distribution (PSD) trends of the form 1/fα. Trends with 1/f characteristics comprise fractal properties with repeating oscillation patterns in multiple time scales. Estimates of the fractal properties enable the quantification of phenomena that may otherwise be difficult to measure, such as transient, non-linear changes. In this study it was hypothesized that the fractal metrics of 1/f BOLD signal trends can map changes related to dynamic, multi-scale alterations in cerebral blood flow (CBF) after a transient hyperventilation challenge. Twenty-three normal adults were imaged in a resting-state before and after hyperventilation. Different variables (1/f trend constant α, fractal dimension Df, and, Hurst exponent H) characterizing the trends were measured from BOLD signals. The results show that fractal metrics of the BOLD signal follow the fractional Gaussian noise model, even during the dynamic CBF change that follows hyperventilation. The most dominant effect on the fractal metrics was detected in grey matter, in line with previous hyperventilation vaso-reactivity studies. The α was able to differentiate also blood vessels from grey matter changes. Df was most sensitive to grey matter. H correlated with default mode network areas before hyperventilation but this pattern vanished after hyperventilation due to a global increase in H. In the future, resting-state fMRI combined with fractal metrics of the BOLD signal may be used for analyzing multi-scale alterations of cerebral blood flow

Multiparametric measurement of cerebral physiology using calibrated fMRI

The ultimate goal of calibrated fMRI is the quantitative imaging of oxygen metabolism (CMRO2), and this has been the focus of numerous methods and approaches. However, one underappreciated aspect of this quest is that in the drive to measure CMRO2, many other physiological parameters of interest are often acquired along the way. This can significantly increase the value of the dataset, providing greater information that is clinically relevant, or detail that can disambiguate the cause of signal variations. This can also be somewhat of a double-edged sword: calibrated fMRI experiments combine multiple parameters into a physiological model that requires multiple steps, thereby providing more opportunity for error propagation and increasing the noise and error of the final derived values. As with all measurements, there is a trade-off between imaging time, spatial resolution, coverage, and accuracy. In this review, we provide a brief overview of the benefits and pitfalls of extracting multiparametric measurements of cerebral physiology through calibrated fMRI experiments

DETECTING BRAIN-WIDE INTRINSIC CONNECTIVITY NETWORKS USING fMRI IN MICE

Functional neuroimaging methods in mice are essential for unraveling complex neuronal networks that underlie maladaptive behavior in neurological disorder models. By using fMRI to detect intrinsic connectivity networks in mice, we can examine large scale alteration in brain activity and functional connectivity to establish causal associations in brain network changes. The work presented in this dissertation is organized into five chapters. Chapter 1 provides the necessary background required to understand how functional neuroimaging tools such as fMRI detect signal changes attributed to spontaneous neuronal activity of intrinsic connectivity networks in mice. Chapter 2 describes the development of our isotropic fMRI acquisition sequence in mice and semi-automated pipeline for mouse fMRI data. Naïve mouse fMRI scans were used to validated the pipeline by reliably and reproducibly extracting intrinsic connectivity networks. Chapter 3 establishes the development and validation of a novel superparamagenetic iron-oxide nanoparticle to enhance fMRI signal sensitivity. Chapter 4 studies the effects norepinephrine released by locus coeruleus neurons on the default mode network in mice. Norepinephrine release selectively enhanced neuronal activity and connectivity in the Frontal module of the default mode network by suppressing information flow from the Retrosplenial-Hippocampal to the Association modules. Chapter 5 addresses the implications of our findings and addresses the limitations and future studies that can be conducted to expand on this research.Doctor of Philosoph

Ageing, Grey Matter Loss and Resting-State Effective Connectivity

Aldring påvirker kroppen på forskjellige måter. Ikke-patologisk aldring karakteriseres av asymmetrisk tap av grå materie, som påvirker den tjukkere hemisfæren sterkere (Roe et al., 2021). Det er ukjent hvordan disse strukturelle forandringene kan relateres til intrinsisk aktivitet som måles med «resting state» funksjonell magnetresonanstomografi (fMRI). Derfor undersøkte vi sammenhengen mellom sannsynlighetsverdier for grå materie (GMPV) og effektiv konnektivet (EC). De observerte dataene inneholder to tidspunkter, T5 og T6, fra det longitudinelle BETULA prosjektet (N = 227). Canonical Correlation Analysis indikerer relasjoner mellom EC og GMPV innom Default Mode Network og Central Executive Network. Sammenhengen mellom EC og GMPV ble spesifisert ved hjelp av generalized additive models. I tillegg fant vi forskjeller i EC mellom T5 og T6, fra venstre dorsal Prefrontal Cortex til høyre medial Temporal Gyrus og høyre Prefrontal Cortex til venstre Precuneus. Videre predikerte GMPV EC bedre enn kronologisk alder. Sammenhengen mellom strukturell og funksjonell lateralisering i de aktuelle dataene var svak. Det ble funnet markører for sammenhengen mellom hjernestruktur og -funksjon.Master's Thesis in PsychologyMAPSYK360INTL-HFINTL-MNINTL-PSYKINTL-MEDMAPS-PSYKINTL-KMDINTL-SVINTL-JU

Influence of Early Bilingual Exposure in the Developing Human Brain.

190 p.La adquisición del lenguaje es un proceso que ese encuentra determinado tanto por mecanismos de desarrollo cognitivo, como por la experiencia lingüística durante los primeros años de vida. Aunque se trata de un proceso relativamente complejo, los bebés muestran una gran habilidad para el aprendizaje del lenguaje. Un entorno de aprendizaje lingüístico bilingüe podría considerarse aun más complejo, ya que los bebés están expuestos a las características lingüísticas de dos lenguas simultáneamente. En primer lugar, los bebés que crecen en un entorno bilingüe tienen que ser capaces de darse cuenta de que están expuestos a dos lenguas diferentes, y posteriormente deben separar y aprender las características especificas de cada una de ellas; por ejemplo, los distintos fonemas, palabras o estructuras gramaticales. Aunque la exposición lingüística total de los bebés bilingües debería ser comparable a la de los bebés monolingües, es probable que la exposición a cada una de las lenguas de su entorno sea menor, ya que tienen que dividir su tiempo de exposición entre ambas. Si bien los bebés bilingües parecen no tener problemas para enfrentarse a un contexto de aprendizaje potencialmente más complejo, ya que alcanzan las distintas etapas de adquisición del lenguaje a un ritmo similar a los bebés monolingües, sí se han observado adaptaciones a nivel conductual y a nivel de funcionamiento cerebral que podrían producirse como consecuencia de este contexto.Basque Center on cognition, brain and languag

Influence of Early Bilingual Exposure in the Developing Human Brain.

190 p.La adquisición del lenguaje es un proceso que ese encuentra determinado tanto por mecanismos de desarrollo cognitivo, como por la experiencia lingüística durante los primeros años de vida. Aunque se trata de un proceso relativamente complejo, los bebés muestran una gran habilidad para el aprendizaje del lenguaje. Un entorno de aprendizaje lingüístico bilingüe podría considerarse aun más complejo, ya que los bebés están expuestos a las características lingüísticas de dos lenguas simultáneamente. En primer lugar, los bebés que crecen en un entorno bilingüe tienen que ser capaces de darse cuenta de que están expuestos a dos lenguas diferentes, y posteriormente deben separar y aprender las características especificas de cada una de ellas; por ejemplo, los distintos fonemas, palabras o estructuras gramaticales. Aunque la exposición lingüística total de los bebés bilingües debería ser comparable a la de los bebés monolingües, es probable que la exposición a cada una de las lenguas de su entorno sea menor, ya que tienen que dividir su tiempo de exposición entre ambas. Si bien los bebés bilingües parecen no tener problemas para enfrentarse a un contexto de aprendizaje potencialmente más complejo, ya que alcanzan las distintas etapas de adquisición del lenguaje a un ritmo similar a los bebés monolingües, sí se han observado adaptaciones a nivel conductual y a nivel de funcionamiento cerebral que podrían producirse como consecuencia de este contexto.Basque Center on cognition, brain and languag