69 research outputs found

    심장 컴퓨터 단층촬영 영상으로부터 경사도 보조 지역 능동 윤곽 모델을 이용한 심장 영역 자동 분할 기법

    Get PDF
    학위논문 (박사)-- 서울대학교 대학원 : 전기·컴퓨터공학부, 2015. 2. 신영길.The heart is one of the most important human organs, and composed of complex structures. Computed tomography angiography (CTA), magnetic resonance imaging (MRI), and single photon emission computed tomography are widely used, non-invasive cardiac imaging modalities. Compared with other modalities, CTA can provide more detailed anatomic information of the heart chambers, vessels, and coronary arteries due to its higher spatial resolution. To obtain important morphological information of the heart, whole heart segmentation is necessary and it can be used for clinical diagnosis. In this paper, we propose a novel framework to segment the four chambers of the heart automatically. First, the whole heart is coarsely extracted. This is separated into the left and right parts using a geometric analysis based on anatomical information and a subsequent power watershed. Then, the proposed gradient-assisted localized active contour model (GLACM) refines the left and right sides of the heart segmentation accurately. Finally, the left and right sides of the heart are separated into atrium and ventricle by minimizing the proposed split energy function that determines the boundary between the atrium and ventricle based on the shape and intensity of the heart. The main challenge of heart segmentation is to extract four chambers from cardiac CTA which has weak edges or separators. To enhance the accuracy of the heart segmentation, we use region-based information and edge-based information for the robustness of the accuracy in heterogeneous region. Model-based method, which requires a number of training data and proper template model, has been widely used for heat segmentation. It is difficult to model those data, since training data should describe precise heart regions and the number of data should be high in order to produce more accurate segmentation results. Besides, the training data are required to be represented with remarkable features, which are generated by manual setting, and these features must have correspondence for each other. However in our proposed methods, the training data and template model is not necessary. Instead, we use edge, intensity and shape information from cardiac CTA for each chamber segmentation. The intensity information of CTA can be substituted for the shape information of the template model. In addition, we devised adaptive radius function and Gaussian-pyramid edge map for GLACM in order to utilize the edge information effectively and improve the accuracy of segmentation comparison with original localizing region-based active contour model (LACM). Since the radius of LACM affects the overall segmentation performance, we proposed an energy function for changing radius adaptively whether homogeneous or heterogeneous region. Also we proposed split energy function in order to segment four chambers of the heart in cardiac CT images and detects the valve of atrium and ventricle. In experimental results using twenty clinical datasets, the proposed method identified the four chambers accurately and efficiently. We also demonstrated that this approach can assist the cardiologist for the clinical investigations and functional analysis.Contents Chapter 1 Introduction 1 1.1 Background and Motivation 1 1.2 Dissertation Goal 7 1.3 Main Contribtions 9 1.4 Organization of the Dissertation 10 Chapter 2 Related Works 11 2.1 Medical Image Segmentation 11 2.1.1 Classic Methods 11 2.1.2 Variational Methods 15 2.1.3 Image Features of the Curve 21 2.1.4 Combinatorial Methods 25 2.1.5 Difficulty of Segmentation 30 2.2 Heart Segmentation 33 2.2.1 Non-Model-Based Segmentation 34 2.2.2 Unstatistical Model-Based Segmentation 35 2.2.3 Statistical Model-Based Segmentation 37 Chapter 3 Gradient-assisted Localized Active Contour Model 41 3.1 LACM 41 3.2 Gaussian-pyramid Edge Map 46 3.3 Adaptive Radius Function 50 3.4 LACM with Gaussian-pyramid Edge Map and Adaptive Radius Function 52 Chapter 4 Segmentation of Four Chambers of Heart 54 4.1 Overview 54 4.2 Segmentation of Whole Heart 56 4.3 Separation of Left and Right Sides of Heart 59 4.3.1 Extraction of Candidate Regions of LV and RV 60 4.3.2 Detection of Left and Right sides of Heart 62 4.4 Segmentation of Left and Right Sides of Heart 66 4.5 Separation of Atrium and Ventricle from Heart 69 4.5.1 Calculation of Principal Axes of Left and Right Sides of Heart 69 4.5.2 Detection of Separation Plane Using Split Energy Function 70 Chapter 5 Experiments 74 5.1 Performance Evaluation 74 5.2 Comparison with Conventional Method 79 5.3 Parametric Study 84 5.4 Computational Performance 85 Chapter 6 Conclusion 86 Bibliography 89Docto

    A CAD system for early diagnosis of autism using different imaging modalities.

    Get PDF
    The term “autism spectrum disorder” (ASD) refers to a collection of neuro-developmental disorders that affect linguistic, behavioral, and social skills. Autism has many symptoms, most prominently, social impairment and repetitive behaviors. It is crucial to diagnose autism at an early stage for better assessment and investigation of this complex syndrome. There have been a lot of efforts to diagnose ASD using different techniques, such as imaging modalities, genetic techniques, and behavior reports. Imaging modalities have been extensively exploited for ASD diagnosis, and one of the most successful ones is Magnetic resonance imaging(MRI),where it has shown promise for the early diagnosis of the ASD related abnormalities in particular. Magnetic resonance imaging (MRI) modalities have emerged as powerful means that facilitate non-invasive clinical diagnostics of various diseases and abnormalities since their inception in the 1980s. After the advent in the nineteen eighties, MRI soon became one of the most promising non- invasive modalities for visualization and diagnostics of ASD-related abnormalities. Along with its main advantage of no exposure to radiation, high contrast, and spatial resolution, the recent advances to MRI modalities have notably increased diagnostic certainty. Multiple MRI modalities, such as different types of structural MRI (sMRI) that examines anatomical changes, and functional MRI (fMRI) that examines brain activity by monitoring blood flow changes,have been employed to investigate facets of ASD in order to better understand this complex syndrome. This work aims at developing a new computer-aided diagnostic (CAD) system for autism diagnosis using different imaging modalities. It mainly relies on making use of structural magnetic resonance images for extracting notable shape features from parts of the brainthat proved to correlate with ASD from previous neuropathological studies. Shape features from both the cerebral cortex (Cx) and cerebral white matter(CWM)are extracted. Fusion of features from these two structures is conducted based on the recent findings suggesting that Cx changes in autism are related to CWM abnormalities. Also, when fusing features from more than one structure, this would increase the robustness of the CAD system. Moreover, fMRI experiments are done and analyzed to find areas of activation in the brains of autistic and typically developing individuals that are related to a specific task. All sMRI findings are fused with those of fMRI to better understand ASD in terms of both anatomy and functionality,and thus better classify the two groups. This is one aspect of the novelty of this CAD system, where sMRI and fMRI studies are both applied on subjects from different ages to diagnose ASD. In order to build such a CAD system, three main blocks are required. First, 3D brain segmentation is applied using a novel hybrid model that combines shape, intensity, and spatial information. Second, shape features from both Cx and CWM are extracted and anf MRI reward experiment is conducted from which areas of activation that are related to the task of this experiment are identified. Those features were extracted from local areas of the brain to provide an accurate analysis of ASD and correlate it with certain anatomical areas. Third and last, fusion of all the extracted features is done using a deep-fusion classification network to perform classification and obtain the diagnosis report. Fusing features from all modalities achieved a classification accuracy of 94.7%, which emphasizes the significance of combining structures/modalities for ASD diagnosis. To conclude, this work could pave the pathway for better understanding of the autism spectrum by finding local areas that correlate to the disease. The idea of personalized medicine is emphasized in this work, where the proposed CAD system holds the promise to resolve autism endophenotypes and help clinicians deliver personalized treatment to individuals affected with this complex syndrome

    27th Annual Computational Neuroscience Meeting (CNS*2018): Part One

    Get PDF

    Using MapReduce Streaming for Distributed Life Simulation on the Cloud

    Get PDF
    Distributed software simulations are indispensable in the study of large-scale life models but often require the use of technically complex lower-level distributed computing frameworks, such as MPI. We propose to overcome the complexity challenge by applying the emerging MapReduce (MR) model to distributed life simulations and by running such simulations on the cloud. Technically, we design optimized MR streaming algorithms for discrete and continuous versions of Conway’s life according to a general MR streaming pattern. We chose life because it is simple enough as a testbed for MR’s applicability to a-life simulations and general enough to make our results applicable to various lattice-based a-life models. We implement and empirically evaluate our algorithms’ performance on Amazon’s Elastic MR cloud. Our experiments demonstrate that a single MR optimization technique called strip partitioning can reduce the execution time of continuous life simulations by 64%. To the best of our knowledge, we are the first to propose and evaluate MR streaming algorithms for lattice-based simulations. Our algorithms can serve as prototypes in the development of novel MR simulation algorithms for large-scale lattice-based a-life models.https://digitalcommons.chapman.edu/scs_books/1014/thumbnail.jp

    Tools and Algorithms for the Construction and Analysis of Systems

    Get PDF
    This open access book constitutes the proceedings of the 28th International Conference on Tools and Algorithms for the Construction and Analysis of Systems, TACAS 2022, which was held during April 2-7, 2022, in Munich, Germany, as part of the European Joint Conferences on Theory and Practice of Software, ETAPS 2022. The 46 full papers and 4 short papers presented in this volume were carefully reviewed and selected from 159 submissions. The proceedings also contain 16 tool papers of the affiliated competition SV-Comp and 1 paper consisting of the competition report. TACAS is a forum for researchers, developers, and users interested in rigorously based tools and algorithms for the construction and analysis of systems. The conference aims to bridge the gaps between different communities with this common interest and to support them in their quest to improve the utility, reliability, exibility, and efficiency of tools and algorithms for building computer-controlled systems

    Tools and Algorithms for the Construction and Analysis of Systems

    Get PDF
    This open access book constitutes the proceedings of the 28th International Conference on Tools and Algorithms for the Construction and Analysis of Systems, TACAS 2022, which was held during April 2-7, 2022, in Munich, Germany, as part of the European Joint Conferences on Theory and Practice of Software, ETAPS 2022. The 46 full papers and 4 short papers presented in this volume were carefully reviewed and selected from 159 submissions. The proceedings also contain 16 tool papers of the affiliated competition SV-Comp and 1 paper consisting of the competition report. TACAS is a forum for researchers, developers, and users interested in rigorously based tools and algorithms for the construction and analysis of systems. The conference aims to bridge the gaps between different communities with this common interest and to support them in their quest to improve the utility, reliability, exibility, and efficiency of tools and algorithms for building computer-controlled systems

    Advancements and Breakthroughs in Ultrasound Imaging

    Get PDF
    Ultrasonic imaging is a powerful diagnostic tool available to medical practitioners, engineers and researchers today. Due to the relative safety, and the non-invasive nature, ultrasonic imaging has become one of the most rapidly advancing technologies. These rapid advances are directly related to the parallel advancements in electronics, computing, and transducer technology together with sophisticated signal processing techniques. This book focuses on state of the art developments in ultrasonic imaging applications and underlying technologies presented by leading practitioners and researchers from many parts of the world
    corecore