9,872 research outputs found
Detecting an induced net subdivision
A {\em net} is a graph consisting of a triangle and three more vertices,
each of degree one and with its neighbour in , and all adjacent to different
vertices of . We give a polynomial-time algorithm to test whether an input
graph has an induced subgraph which is a subdivision of a net. Unlike many
similar questions, this does not seem to be solvable by an application of the
"three-in-a-tree" subroutine
Community core detection in transportation networks
This work analyses methods for the identification and the stability under
perturbation of a territorial community structure with specific reference to
transportation networks. We considered networks of commuters for a city and an
insular region. In both cases, we have studied the distribution of commuters'
trips (i.e., home-to-work trips and viceversa). The identification and
stability of the communities' cores are linked to the land-use distribution
within the zone system, and therefore their proper definition may be useful to
transport planners.Comment: 8 pages, 13 figure
Span programs and quantum algorithms for st-connectivity and claw detection
We introduce a span program that decides st-connectivity, and generalize the
span program to develop quantum algorithms for several graph problems. First,
we give an algorithm for st-connectivity that uses O(n d^{1/2}) quantum queries
to the n x n adjacency matrix to decide if vertices s and t are connected,
under the promise that they either are connected by a path of length at most d,
or are disconnected. We also show that if T is a path, a star with two
subdivided legs, or a subdivision of a claw, its presence as a subgraph in the
input graph G can be detected with O(n) quantum queries to the adjacency
matrix. Under the promise that G either contains T as a subgraph or does not
contain T as a minor, we give O(n)-query quantum algorithms for detecting T
either a triangle or a subdivision of a star. All these algorithms can be
implemented time efficiently and, except for the triangle-detection algorithm,
in logarithmic space. One of the main techniques is to modify the
st-connectivity span program to drop along the way "breadcrumbs," which must be
retrieved before the path from s is allowed to enter t.Comment: 18 pages, 4 figure
A supervised clustering approach for fMRI-based inference of brain states
We propose a method that combines signals from many brain regions observed in
functional Magnetic Resonance Imaging (fMRI) to predict the subject's behavior
during a scanning session. Such predictions suffer from the huge number of
brain regions sampled on the voxel grid of standard fMRI data sets: the curse
of dimensionality. Dimensionality reduction is thus needed, but it is often
performed using a univariate feature selection procedure, that handles neither
the spatial structure of the images, nor the multivariate nature of the signal.
By introducing a hierarchical clustering of the brain volume that incorporates
connectivity constraints, we reduce the span of the possible spatial
configurations to a single tree of nested regions tailored to the signal. We
then prune the tree in a supervised setting, hence the name supervised
clustering, in order to extract a parcellation (division of the volume) such
that parcel-based signal averages best predict the target information.
Dimensionality reduction is thus achieved by feature agglomeration, and the
constructed features now provide a multi-scale representation of the signal.
Comparisons with reference methods on both simulated and real data show that
our approach yields higher prediction accuracy than standard voxel-based
approaches. Moreover, the method infers an explicit weighting of the regions
involved in the regression or classification task
Folding and unfolding phylogenetic trees and networks
Phylogenetic networks are rooted, labelled directed acyclic graphs which are commonly used to represent reticulate evolution. There is a close relationship between phylogenetic networks and multi-labelled trees (MUL-trees). Indeed, any phylogenetic network can be "unfolded" to obtain a MUL-tree and, conversely, a MUL-tree can in certain circumstances be "folded" to obtain a phylogenetic network that exhibits . In this paper, we study properties of the operations and in more detail. In particular, we introduce the class of stable networks, phylogenetic networks for which is isomorphic to , characterise such networks, and show that they are related to the well-known class of tree-sibling networks.We also explore how the concept of displaying a tree in a network can be related to displaying the tree in the MUL-tree . To do this, we develop a phylogenetic analogue of graph fibrations. This allows us to view as the analogue of the universal cover of a digraph, and to establish a close connection between displaying trees in and reconcilingphylogenetic trees with networks
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