Communication channel analysis and real time compressed sensing for high density neural recording devices

Next generation neural recording and Brain- Machine Interface (BMI) devices call for high density or distributed systems with more than 1000 recording sites. As the recording site density grows, the device generates data on the scale of several hundred megabits per second (Mbps). Transmitting such large amounts of data induces significant power consumption and heat dissipation for the implanted electronics. Facing these constraints, efficient on-chip compression techniques become essential to the reduction of implanted systems power consumption. This paper analyzes the communication channel constraints for high density neural recording devices. This paper then quantifies the improvement on communication channel using efficient on-chip compression methods. Finally, This paper describes a Compressed Sensing (CS) based system that can reduce the data rate by > 10x times while using power on the order of a few hundred nW per recording channel

Toward Brain Area Sensor Wireless Network

RÉSUMÉ De nouvelles approches d'interfaçage neuronal de haute performance sont requises pour les interfaces cerveau-machine (BMI) actuelles. Cela nécessite des capacités d'enregistrement/stimulation performantes en termes de vitesse, qualité et quantité, c’est à dire une bande passante à fréquence plus élevée, une résolution spatiale, un signal sur bruit et une zone plus large pour l'interface avec le cortex cérébral. Dans ce mémoire, nous parlons de l'idée générale proposant une méthode d'interfaçage neuronal qui, en comparaison avec l'électroencéphalographie (EEG), l'électrocorticographie (ECoG) et les méthodes d'interfaçage intracortical conventionnelles à une seule unité, offre de meilleures caractéristiques pour implémenter des IMC plus performants. Les avantages de la nouvelle approche sont 1) une résolution spatiale plus élevée - en dessous dumillimètre, et une qualité de signal plus élevée - en termes de rapport signal sur bruit et de contenu fréquentiel - comparé aux méthodes EEG et ECoG; 2) un caractère moins invasif que l'ECoG où l'enlèvement du crâne sous une opération d'enregistrement / stimulation est nécessaire; 3) une plus grande faisabilité de la libre circulation du patient à l'étude - par rapport aux deux méthodes EEG et ECoG où de nombreux fils sont connectés au patient en cours d'opération; 4) une utilisation à long terme puisque l'interface implantable est sans fil - par rapport aux deux méthodes EEG et ECoG qui offrent des temps limités de fonctionnement. Nous présentons l'architecture d'un réseau sans fil de microsystèmes implantables, que nous appelons Brain Area Sensor NETwork (Brain-ASNET). Il y a deux défis principaux dans la réalisation du projet Brain-ASNET. 1) la conception et la mise en oeuvre d'un émetteur-récepteur RF de faible consommation compatible avec la puce de capteurs de réseau implantable, et, 2) la conception d'un protocole de réseau de capteurs sans fil (WSN) ad-hoc économe en énergie. Dans ce mémoire, nous présentons un protocole de réseau ad-hoc économe en énergie pour le réseau désiré, ainsi qu'un procédé pour surmonter le problème de la longueur de paquet variable causé par le processus de remplissage de bit dans le protocole HDLC standard. Le protocole adhoc proposé conçu pour Brain-ASNET présente une meilleure efficacité énergétique par rapport aux protocoles standards tels que ZigBee, Bluetooth et Wi-Fi ainsi que des protocoles ad-hoc de pointe. Le protocole a été conçu et testé par MATLAB et Simulink.----------ABSTRACT New high-performance neural interfacing approaches are demanded for today’s Brain-Machine Interfaces (BMI). This requires high-performance recording/stimulation capabilities in terms of speed, quality, and quantity, i.e. higher frequency bandwidth, spatial resolution, signal-to-noise, and wider area to interface with the cerebral cortex. In this thesis, we talk about the general proposed idea of a neural interfacing method which in comparison with Electroencephalography (EEG), Electrocorticography (ECoG), and, conventional Single-Unit Intracortical neural interfacing methods offers better features to implement higher-performance BMIs. The new approach advantages are 1) higher spatial resolution – down to sub-millimeter, and higher signal quality − in terms of signal-to-noise ratio and frequency content − compared to both EEG and ECoG methods. 2) being less invasive than ECoG where skull removal Under recording/stimulation surgery is required. 3) higher feasibility of freely movement of patient under study − compared to both EEG and ECoG methods where lots of wires are connected to the patient under operation. 4) long-term usage as the implantable interface is wireless − compared to both EEG and ECoG methods where it is practical for only a limited time under operation. We present the architecture of a wireless network of implantable microsystems, which we call it Brain Area Sensor NETwork (Brain-ASNET). There are two main challenges in realization of the proposed Brain-ASNET. 1) design and implementation of power-hungry RF transceiver of the implantable network sensors' chip, and, 2) design of an energy-efficient ad-hoc Wireless Sensor Network (WSN) protocol. In this thesis, we introduce an energy-efficient ad-hoc network protocol for the desired network, along with a method to overcome the issue of variable packet length caused by bit stuffing process in standard HDLC protocol. The proposed ad-hoc protocol designed for Brain-ASNET shows better energy-efficiency compared to standard protocols like ZigBee, Bluetooth, and Wi-Fi as well as state-of-the-art ad-hoc protocols. The protocol was designed and tested by MATLAB and Simulink

Microsystème implantable dédié à la stimulation du cortex visuel

Notions fondamentales au sujet des stimulateurs implantables -- La stimulation électrique fonctionnelle -- Généralités au sujet des stimulateurs implantables -- Restitution de la vision par la stimulation électrique fonctionnelle -- Le système visuel biologique -- Principes et historique des implants visuels -- Considérations spécifiques aux implants intra-corticaux -- Travaux de pointe dans le domaine -- Dispositifs implantables -- Liens inductifs -- Composants externes -- Travaux du laboratoire de neurotechnologies polystim -- Conception et validation du dispositif implantable -- Architecture globale de l'implant -- Module de stimulation -- Module d'interface -- Implémentation et résultats expérimentaux -- Faisabilité d'une prothèse complète sur la base de l'implant proposé -- Conception et validatin du contrôleur externe -- Optimisation au niveau de la puissance dissipée -- Description du système externe -- Implémentation et validation -- Système d'expérimentation in-vivo -- Parotocoles d'expérimentation comportementale -- Description du système expérimental -- Fabrication du système expérimental

Restoring Fine Motor Skills through Neural Interface Technology.

Loss of motor function in the upper-limb, whether through paralysis or through loss of the limb itself, is a profound disability which affects a large population worldwide. Lifelike, fully-articulated prosthetic hands exist and are commercially available; however, there is currently no satisfactory method of controlling all of the available degrees of freedom. In order to generate better control signals for this technology, and help restore normal movement, it is necessary to interface directly with the nervous system. This thesis is intended to address several of the limitations of current neural interfaces and enable the long-term extraction of control signals for fine movements of the hand and fingers. The first study addresses the problems of low signal amplitudes and short implant lifetimes in peripheral nerve interfaces. In two rhesus macaques, we demonstrate the successful implantation of regenerative peripheral nerve interfaces (RPNI), which allowed us to record high amplitude, functionally-selective signals from peripheral nerves up to 20 months post-implantation. These signals could be accurately decoded into intended movement, and used to enable monkeys to control a virtual hand prosthesis. The second study presents a novel experimental paradigm for intracortical neural interfaces, which enables detailed investigation of fine motor information contained in primary motor cortex. We used this paradigm to demonstrate accurate decoding of continuous fingertip position and enable a monkey to control a virtual hand in closed-loop. This is the first demonstration of volitional control of fine motor skill enabled by a cortical neural interface. The final study presents the design and testing of a wireless implantable neural recording system. By extracting signal power in a single, configurable frequency band onboard the device, this system achieves low power consumption while maintaining decode performance, and is applicable to cortical, peripheral, and myoelectric signals. Taken together, these results represent a significant step towards clinical reality for neural interfaces, and towards restoration of full and dexterous movement for people with severe disabilities.PhDBiomedical EngineeringUniversity of Michigan, Horace H. Rackham School of Graduate Studieshttp://deepblue.lib.umich.edu/bitstream/2027.42/120648/1/irwinz_1.pd

Nat Methods

Advances in techniques for recording large-scale brain activity contribute to both the elucidation of neurophysiological principles and the development of brain-machine interfaces (BMIs). Here we describe a neurophysiological paradigm for performing tethered and wireless large-scale recordings based on movable volumetric three-dimensional (3D) multielectrode implants. This approach allowed us to isolate up to 1,800 neurons (units) per animal and simultaneously record the extracellular activity of close to 500 cortical neurons, distributed across multiple cortical areas, in freely behaving rhesus monkeys. The method is expandable, in principle, to thousands of simultaneously recorded channels. It also allows increased recording longevity (5 consecutive years) and recording of a broad range of behaviors, such as social interactions, and BMI paradigms in freely moving primates. We propose that wireless large-scale recordings could have a profound impact on basic primate neurophysiology research while providing a framework for the development and testing of clinically relevant neuroprostheses.20142014-12-01T00:00:00ZT32 GM008441/GM/NIGMS NIH HHS/United StatesDP1MH099903/DP/NCCDPHP CDC HHS/United StatesR01NS073952/NS/NINDS NIH HHS/United StatesDP1 MH099903/MH/NIMH NIH HHS/United StatesUL1 TR001117/TR/NCATS NIH HHS/United StatesR01 NS073952/NS/NINDS NIH HHS/United StatesDP1 OD006798/OD/NIH HHS/United States24776634PMC416103

ResOT: Resource-Efficient Oblique Trees for Neural Signal Classification

Classifiers that can be implemented on chip with minimal computational and memory resources are essential for edge computing in emerging applications such as medical and IoT devices. This paper introduces a machine learning model based on oblique decision trees to enable resource-efficient classification on a neural implant. By integrating model compression with probabilistic routing and implementing cost-aware learning, our proposed model could significantly reduce the memory and hardware cost compared to state-of-the-art models, while maintaining the classification accuracy. We trained the resource-efficient oblique tree with power-efficient regularization (ResOT-PE) on three neural classification tasks to evaluate the performance, memory, and hardware requirements. On seizure detection task, we were able to reduce the model size by 3.4X and the feature extraction cost by 14.6X compared to the ensemble of boosted trees, using the intracranial EEG from 10 epilepsy patients. In a second experiment, we tested the ResOT-PE model on tremor detection for Parkinson's disease, using the local field potentials from 12 patients implanted with a deep-brain stimulation (DBS) device. We achieved a comparable classification performance as the state-of-the-art boosted tree ensemble, while reducing the model size and feature extraction cost by 10.6X and 6.8X, respectively. We also tested on a 6-class finger movement detection task using ECoG recordings from 9 subjects, reducing the model size by 17.6X and feature computation cost by 5.1X. The proposed model can enable a low-power and memory-efficient implementation of classifiers for real-time neurological disease detection and motor decoding