An open and extensible framework for spatially explicit land use change modelling in R: the lulccR package (0.1.0)

Land use change has important consequences for biodiversity and the sustainability of ecosystem services, as well as for global environmental change. Spatially explicit land use change models improve our understanding of the processes driving change and make predictions about the quantity and location of future and past change. Here we present the lulccR package, an object-oriented framework for land use change modelling written in the R programming language. The contribution of the work is to resolve the following limitations associated with the current land use change modelling paradigm: (1) the source code for model implementations is frequently unavailable, severely compromising the reproducibility of scientific results and making it impossible for members of the community to improve or adapt models for their own purposes; (2) ensemble experiments to capture model structural uncertainty are difficult because of fundamental differences between implementations of different models; (3) different aspects of the modelling procedure must be performed in different environments because existing applications usually only perform the spatial allocation of change. The package includes a stochastic ordered allocation procedure as well as an implementation of the widely used CLUE-S algorithm. We demonstrate its functionality by simulating land use change at the Plum Island Ecosystems site, using a dataset included with the package. It is envisaged that lulccR will enable future model development and comparison within an open environment

Complex, Dynamic Combination of Physical, Chemical and Nutritional Variables Controls Spatio-Temporal Variation of Sandy Beach Community Structure

Sandy beach ecological theory states that physical features of the beach control macrobenthic community structure on all but the most dissipative beaches. However, few studies have simultaneously evaluated the relative importance of physical, chemical and biological factors as potential explanatory variables for meso-scale spatio-temporal patterns of intertidal community structure in these systems. Here, we investigate macroinfaunal community structure of a micro-tidal sandy beach that is located on an oligotrophic subtropical coast and is influenced by seasonal estuarine input. We repeatedly sampled biological and environmental variables at a series of beach transects arranged at increasing distances from the estuary mouth. Sampling took place over a period of five months, corresponding with the transition between the dry and wet season. This allowed assessment of biological-physical relationships across chemical and nutritional gradients associated with a range of estuarine inputs. Physical, chemical, and biological response variables, as well as measures of community structure, showed significant spatio-temporal patterns. In general, bivariate relationships between biological and environmental variables were rare and weak. However, multivariate correlation approaches identified a variety of environmental variables (i.e., sampling session, the C:N ratio of particulate organic matter, dissolved inorganic nutrient concentrations, various size fractions of photopigment concentrations, salinity and, to a lesser extent, beach width and sediment kurtosis) that either alone or combined provided significant explanatory power for spatio-temporal patterns of macroinfaunal community structure. Overall, these results showed that the macrobenthic community on Mtunzini Beach was not structured primarily by physical factors, but instead by a complex and dynamic blend of nutritional, chemical and physical drivers. This emphasises the need to recognise ocean-exposed sandy beaches as functional ecosystems in their own right

Developing Efficient Discrete Simulations on Multicore and GPU Architectures

In this paper we show how to efficiently implement parallel discrete simulations on multicoreandGPUarchitecturesthrougharealexampleofanapplication: acellularautomatamodel of laser dynamics. We describe the techniques employed to build and optimize the implementations using OpenMP and CUDA frameworks. We have evaluated the performance on two different hardware platforms that represent different target market segments: high-end platforms for scientific computing, using an Intel Xeon Platinum 8259CL server with 48 cores, and also an NVIDIA Tesla V100GPU,bothrunningonAmazonWebServer(AWS)Cloud;and on a consumer-oriented platform, using an Intel Core i9 9900k CPU and an NVIDIA GeForce GTX 1050 TI GPU. Performance results were compared and analyzed in detail. We show that excellent performance and scalability can be obtained in both platforms, and we extract some important issues that imply a performance degradation for them. We also found that current multicore CPUs with large core numbers can bring a performance very near to that of GPUs, and even identical in some cases.Ministerio de Economía, Industria y Competitividad, Gobierno de España (MINECO), and the Agencia Estatal de Investigación (AEI) of Spain, cofinanced by FEDER funds (EU) TIN2017-89842

Applying multi-temporal landsat satellite data and markov-cellular automata to predict forest cover change and forest degradation of sundarban reserve forest, Bangladesh

Overdependence on and exploitation of forest resources have significantly transformed the natural reserve forest of Sundarban, which shares the largest mangrove territory in the world, into a great degradation status. By observing these, a most pressing concern is how much degradation occurred in the past, and what will be the scenarios in the future if they continue? To confirm the degradation status in the past decades and reveal the future trend, we took Sundarban Reserve Forest (SRF) as an example, and used satellite Earth observation historical Landsat imagery between 1989 and 2019 as existing data and primary data. Moreover, a geographic information system model was considered to estimate land cover (LC) change and spatial health quality of the SRF from 1989 to 2029 based on the large and small tree categories. The maximum likelihood classifier (MLC) technique was employed to classify the historical images with five different LC types, which were further considered for future projection (2029) including trends based on 2019 simulation results from 1989 and 2019 LC maps using the Markov-cellular automata model. The overall accuracy achieved was 82.30%~90.49% with a kappa value of 0.75~0.87. The historical result showed forest degradation in the past (1989–2019) of 4773.02 ha yr−1, considered as great forest degradation (GFD) and showed a declining status when moving with the projection (2019–2029) of 1508.53 ha yr−1 and overall there was a decline of 3956.90 ha yr−1 in the 1989–2029 time period. Moreover, the study also observed that dense forest was gradually degraded (good to bad) but, conversely, light forest was enhanced, which will continue in the future even to 2029 if no effective management is carried out. Therefore, by observing the GFD, through spatial forest health quality and forest degradation mapping and assessment, the study suggests a few policies that require the immediate attention of forest policy-makers to implement them immediately and ensure sustainable development in the SRF.</jats:p

Predicting and understanding spatio-temporal dynamics of species recovery : implications for Asian crested ibis Nipponia nippon conservation in China

Acknowledgements This work was supported by the National Natural Science Foundation of China (No. 31372218) and cofunded by the China Scholarship Council (CSC) and the ITC Research Fund, Enschede, the Netherlands. We thank Shaanxi Hanzhong Crested Ibis National Nature Reserve for sharing the data of nest site locations. We are grateful to Brendan Wintle, Justin Travis and two anonymous reviewers for helpful comments on a previous version of the manuscript.Peer reviewedPublisher PD