10,203 research outputs found

    JGraphT -- A Java library for graph data structures and algorithms

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    Mathematical software and graph-theoretical algorithmic packages to efficiently model, analyze and query graphs are crucial in an era where large-scale spatial, societal and economic network data are abundantly available. One such package is JGraphT, a programming library which contains very efficient and generic graph data-structures along with a large collection of state-of-the-art algorithms. The library is written in Java with stability, interoperability and performance in mind. A distinctive feature of this library is the ability to model vertices and edges as arbitrary objects, thereby permitting natural representations of many common networks including transportation, social and biological networks. Besides classic graph algorithms such as shortest-paths and spanning-tree algorithms, the library contains numerous advanced algorithms: graph and subgraph isomorphism; matching and flow problems; approximation algorithms for NP-hard problems such as independent set and TSP; and several more exotic algorithms such as Berge graph detection. Due to its versatility and generic design, JGraphT is currently used in large-scale commercial, non-commercial and academic research projects. In this work we describe in detail the design and underlying structure of the library, and discuss its most important features and algorithms. A computational study is conducted to evaluate the performance of JGraphT versus a number of similar libraries. Experiments on a large number of graphs over a variety of popular algorithms show that JGraphT is highly competitive with other established libraries such as NetworkX or the BGL.Comment: Major Revisio

    Web Data Extraction, Applications and Techniques: A Survey

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    Web Data Extraction is an important problem that has been studied by means of different scientific tools and in a broad range of applications. Many approaches to extracting data from the Web have been designed to solve specific problems and operate in ad-hoc domains. Other approaches, instead, heavily reuse techniques and algorithms developed in the field of Information Extraction. This survey aims at providing a structured and comprehensive overview of the literature in the field of Web Data Extraction. We provided a simple classification framework in which existing Web Data Extraction applications are grouped into two main classes, namely applications at the Enterprise level and at the Social Web level. At the Enterprise level, Web Data Extraction techniques emerge as a key tool to perform data analysis in Business and Competitive Intelligence systems as well as for business process re-engineering. At the Social Web level, Web Data Extraction techniques allow to gather a large amount of structured data continuously generated and disseminated by Web 2.0, Social Media and Online Social Network users and this offers unprecedented opportunities to analyze human behavior at a very large scale. We discuss also the potential of cross-fertilization, i.e., on the possibility of re-using Web Data Extraction techniques originally designed to work in a given domain, in other domains.Comment: Knowledge-based System

    Network Sampling: From Static to Streaming Graphs

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    Network sampling is integral to the analysis of social, information, and biological networks. Since many real-world networks are massive in size, continuously evolving, and/or distributed in nature, the network structure is often sampled in order to facilitate study. For these reasons, a more thorough and complete understanding of network sampling is critical to support the field of network science. In this paper, we outline a framework for the general problem of network sampling, by highlighting the different objectives, population and units of interest, and classes of network sampling methods. In addition, we propose a spectrum of computational models for network sampling methods, ranging from the traditionally studied model based on the assumption of a static domain to a more challenging model that is appropriate for streaming domains. We design a family of sampling methods based on the concept of graph induction that generalize across the full spectrum of computational models (from static to streaming) while efficiently preserving many of the topological properties of the input graphs. Furthermore, we demonstrate how traditional static sampling algorithms can be modified for graph streams for each of the three main classes of sampling methods: node, edge, and topology-based sampling. Our experimental results indicate that our proposed family of sampling methods more accurately preserves the underlying properties of the graph for both static and streaming graphs. Finally, we study the impact of network sampling algorithms on the parameter estimation and performance evaluation of relational classification algorithms

    Educating the educators: Incorporating bioinformatics into biological science education in Malaysia

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    Bioinformatics can be defined as a fusion of computational and biological sciences. The urgency to process and analyse the deluge of data created by proteomics and genomics studies has caused bioinformatics to gain prominence and importance. However, its multidisciplinary nature has created a unique demand for specialist trained in both biology and computing. In this review, we described the components that constitute the bioinformatics field and distinctive education criteria that are required to produce individuals with bioinformatics training. This paper will also provide an introduction and overview of bioinformatics in Malaysia. The existing bioinformatics scenario in Malaysia was surveyed to gauge its advancement and to plan for future bioinformatics education strategies. For comparison, we surveyed methods and strategies used in education by other countries so that lessons can be learnt to further improve the implementation of bioinformatics in Malaysia. It is believed that accurate and sufficient steerage from the academia and industry will enable Malaysia to produce quality bioinformaticians in the future

    From Frequency to Meaning: Vector Space Models of Semantics

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    Computers understand very little of the meaning of human language. This profoundly limits our ability to give instructions to computers, the ability of computers to explain their actions to us, and the ability of computers to analyse and process text. Vector space models (VSMs) of semantics are beginning to address these limits. This paper surveys the use of VSMs for semantic processing of text. We organize the literature on VSMs according to the structure of the matrix in a VSM. There are currently three broad classes of VSMs, based on term-document, word-context, and pair-pattern matrices, yielding three classes of applications. We survey a broad range of applications in these three categories and we take a detailed look at a specific open source project in each category. Our goal in this survey is to show the breadth of applications of VSMs for semantics, to provide a new perspective on VSMs for those who are already familiar with the area, and to provide pointers into the literature for those who are less familiar with the field

    Computing Competencies for Undergraduate Data Science Curricula: ACM Data Science Task Force

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    At the August 2017 ACM Education Council meeting, a task force was formed to explore a process to add to the broad, interdisciplinary conversation on data science, with an articulation of the role of computing discipline-specific contributions to this emerging field. Specifically, the task force would seek to define what the computing/computational contributions are to this new field, and provide guidance on computing-specific competencies in data science for departments offering such programs of study at the undergraduate level. There are many stakeholders in the discussion of data science – these include colleges and universities that (hope to) offer data science programs, employers who hope to hire a workforce with knowledge and experience in data science, as well as individuals and professional societies representing the fields of computing, statistics, machine learning, computational biology, computational social sciences, digital humanities, and others. There is a shared desire to form a broad interdisciplinary definition of data science and to develop curriculum guidance for degree programs in data science. This volume builds upon the important work of other groups who have published guidelines for data science education. There is a need to acknowledge the definition and description of the individual contributions to this interdisciplinary field. For instance, those interested in the business context for these concepts generally use the term “analytics”; in some cases, the abbreviation DSA appears, meaning Data Science and Analytics. This volume is the third draft articulation of computing-focused competencies for data science. It recognizes the inherent interdisciplinarity of data science and situates computing-specific competencies within the broader interdisciplinary space

    Ontology based recommender system using social network data

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    Online Social Network (OSN) is considered a key source of information for real-time decision making. However, several constraints lead to decreasing the amount of information that a researcher can have while increasing the time of social network mining procedures. In this context, this paper proposes a new framework for sampling Online Social Network (OSN). Domain knowledge is used to define tailored strategies that can decrease the budget and time required for mining while increasing the recall. An ontology supports our filtering layer in evaluating the relatedness of nodes. Our approach demonstrates that the same mechanism can be advanced to prompt recommendations to users. Our test cases and experimental results emphasize the importance of the strategy definition step in our social miner and the application of ontologies on the knowledge graph in the domain of recommendation analysis

    Focused image search in the social Web.

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    Recently, social multimedia-sharing websites, which allow users to upload, annotate, and share online photo or video collections, have become increasingly popular. The user tags or annotations constitute the new multimedia meta-data . We present an image search system that exploits both image textual and visual information. First, we use focused crawling and DOM Tree based web data extraction methods to extract image textual features from social networking image collections. Second, we propose the concept of visual words to handle the image\u27s visual content for fast indexing and searching. We also develop several user friendly search options to allow users to query the index using words and image feature descriptions (visual words). The developed image search system tries to bridge the gap between the scalable industrial image search engines, which are based on keyword search, and the slower content based image retrieval systems developed mostly in the academic field and designed to search based on image content only. We have implemented a working prototype by crawling and indexing over 16,056 images from flickr.com, one of the most popular image sharing websites. Our experimental results on a working prototype confirm the efficiency and effectiveness of the methods, that we proposed
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