BRAHMS: Novel middleware for integrated systems computation

Biological computational modellers are becoming increasingly interested in building large, eclectic models, including components on many different computational substrates, both biological and non-biological. At the same time, the rise of the philosophy of embodied modelling is generating a need to deploy biological models as controllers for robots in real-world environments. Finally, robotics engineers are beginning to find value in seconding biomimetic control strategies for use on practical robots. Together with the ubiquitous desire to make good on past software development effort, these trends are throwing up new challenges of intellectual and technological integration (for example across scales, across disciplines, and even across time) - challenges that are unmet by existing software frameworks. Here, we outline these challenges in detail, and go on to describe a newly developed software framework, BRAHMS. that meets them. BRAHMS is a tool for integrating computational process modules into a viable, computable system: its generality and flexibility facilitate integration across barriers, such as those described above, in a coherent and effective way. We go on to describe several cases where BRAHMS has been successfully deployed in practical situations. We also show excellent performance in comparison with a monolithic development approach. Additional benefits of developing in the framework include source code self-documentation, automatic coarse-grained parallelisation, cross-language integration, data logging, performance monitoring, and will include dynamic load-balancing and 'pause and continue' execution. BRAHMS is built on the nascent, and similarly general purpose, model markup language, SystemML. This will, in future, also facilitate repeatability and accountability (same answers ten years from now), transparent automatic software distribution, and interfacing with other SystemML tools. (C) 2009 Elsevier Ltd. All rights reserved

A File System Abstraction for Sense and Respond Systems

The heterogeneity and resource constraints of sense-and-respond systems pose significant challenges to system and application development. In this paper, we present a flexible, intuitive file system abstraction for organizing and managing sense-and-respond systems based on the Plan 9 design principles. A key feature of this abstraction is the ability to support multiple views of the system via filesystem namespaces. Constructed logical views present an application-specific representation of the network, thus enabling high-level programming of the network. Concurrently, structural views of the network enable resource-efficient planning and execution of tasks. We present and motivate the design using several examples, outline research challenges and our research plan to address them, and describe the current state of implementation.Comment: 6 pages, 3 figures Workshop on End-to-End, Sense-and-Respond Systems, Applications, and Services In conjunction with MobiSys '0

MiniCPS: A toolkit for security research on CPS Networks

In recent years, tremendous effort has been spent to modernizing communication infrastructure in Cyber-Physical Systems (CPS) such as Industrial Control Systems (ICS) and related Supervisory Control and Data Acquisition (SCADA) systems. While a great amount of research has been conducted on network security of office and home networks, recently the security of CPS and related systems has gained a lot of attention. Unfortunately, real-world CPS are often not open to security researchers, and as a result very few reference systems and topologies are available. In this work, we present MiniCPS, a CPS simulation toolbox intended to alleviate this problem. The goal of MiniCPS is to create an extensible, reproducible research environment targeted to communications and physical-layer interactions in CPS. MiniCPS builds on Mininet to provide lightweight real-time network emulation, and extends Mininet with tools to simulate typical CPS components such as programmable logic controllers, which use industrial protocols (Ethernet/IP, Modbus/TCP). In addition, MiniCPS defines a simple API to enable physical-layer interaction simulation. In this work, we demonstrate applications of MiniCPS in two example scenarios, and show how MiniCPS can be used to develop attacks and defenses that are directly applicable to real systems.Comment: 8 pages, 6 figures, 1 code listin

Particle-based and Meshless Methods with Aboria

Aboria is a powerful and flexible C++ library for the implementation of particle-based numerical methods. The particles in such methods can represent actual particles (e.g. Molecular Dynamics) or abstract particles used to discretise a continuous function over a domain (e.g. Radial Basis Functions). Aboria provides a particle container, compatible with the Standard Template Library, spatial search data structures, and a Domain Specific Language to specify non-linear operators on the particle set. This paper gives an overview of Aboria's design, an example of use, and a performance benchmark

RELEASE: A High-level Paradigm for Reliable Large-scale Server Software

Erlang is a functional language with a much-emulated model for building reliable distributed systems. This paper outlines the RELEASE project, and describes the progress in the first six months. The project aim is to scale the Erlang’s radical concurrency-oriented programming paradigm to build reliable general-purpose software, such as server-based systems, on massively parallel machines. Currently Erlang has inherently scalable computation and reliability models, but in practice scalability is constrained by aspects of the language and virtual machine. We are working at three levels to address these challenges: evolving the Erlang virtual machine so that it can work effectively on large scale multicore systems; evolving the language to Scalable Distributed (SD) Erlang; developing a scalable Erlang infrastructure to integrate multiple, heterogeneous clusters. We are also developing state of the art tools that allow programmers to understand the behaviour of massively parallel SD Erlang programs. We will demonstrate the effectiveness of the RELEASE approach using demonstrators and two large case studies on a Blue Gene

A modular software architecture for UAVs

There have been several attempts to create scalable and hardware independent software architectures for Unmanned Aerial Vehicles (UAV). In this work, we propose an onboard architecture for UAVs where hardware abstraction, data storage and communication between modules are efficiently maintained. All processing and software development is done on the UAV while state and mission status of the UAV is monitored from a ground station. The architecture also allows rapid development of mission-specific third party applications on the vehicle with the help of the core module