Accelerating Iterative Computations for Large-Scale Data Processing

Recent advances in sensing, storage, and networking technologies are creating massive amounts of data at an unprecedented scale and pace. Large-scale data processing is commonly leveraged to make sense of these data, which will enable companies, governments, and organizations, to make better decisions and bring convenience to our daily life. However, the massive amount of data involved makes it challenging to perform data processing in a timely manner. On the one hand, huge volumes of data might not even fit into the disk of a single machine. On the other hand, data mining and machine learning algorithms, which are usually involved in large-scale data processing, typically require time-consuming iterative computations. Therefore, it is imperative to efficiently perform iterative computations on large computer clusters or cloud using highly-parallel and shared-nothing distributed systems. This research aims to explore new forms of iterative computations that reduce unnecessary computations so as to accelerate large-scale data processing in a distributed environment. We propose the iterative computation transformation for well-known data mining and machine learning algorithms, such as expectation-maximization, nonnegative matrix factorization, belief propagation, and graph algorithms (e.g., PageRank). These algorithms have been used in a wide range of application domains. First, we show how to accelerate expectation-maximization algorithms with frequent updates in a distributed environment. Then, we illustrate the way of efficiently scaling distributed nonnegative matrix factorization with block-wise updates. Next, our approach of scaling distributed belief propagation with prioritized block updates is presented. Last, we illustrate how to efficiently perform distributed incremental computation on evolving graphs. We will elaborate how to implement these transformed iterative computations on existing distributed programming models such as the MapReduce-based model, as well as develop new scalable and efficient distributed programming models and frameworks when necessary. The goal of these supporting distributed frameworks is to lift the burden of the programmers in specifying transformation of iterative computations and communication mechanisms, and automatically optimize the execution of the computation. Our techniques are evaluated extensively to demonstrate their efficiency. While the techniques we propose are in the context of specific algorithms, they address the challenges commonly faced in many other algorithms

REX: Recursive, Delta-Based Data-Centric Computation

In today's Web and social network environments, query workloads include ad hoc and OLAP queries, as well as iterative algorithms that analyze data relationships (e.g., link analysis, clustering, learning). Modern DBMSs support ad hoc and OLAP queries, but most are not robust enough to scale to large clusters. Conversely, "cloud" platforms like MapReduce execute chains of batch tasks across clusters in a fault tolerant way, but have too much overhead to support ad hoc queries. Moreover, both classes of platform incur significant overhead in executing iterative data analysis algorithms. Most such iterative algorithms repeatedly refine portions of their answers, until some convergence criterion is reached. However, general cloud platforms typically must reprocess all data in each step. DBMSs that support recursive SQL are more efficient in that they propagate only the changes in each step -- but they still accumulate each iteration's state, even if it is no longer useful. User-defined functions are also typically harder to write for DBMSs than for cloud platforms. We seek to unify the strengths of both styles of platforms, with a focus on supporting iterative computations in which changes, in the form of deltas, are propagated from iteration to iteration, and state is efficiently updated in an extensible way. We present a programming model oriented around deltas, describe how we execute and optimize such programs in our REX runtime system, and validate that our platform also handles failures gracefully. We experimentally validate our techniques, and show speedups over the competing methods ranging from 2.5 to nearly 100 times.Comment: VLDB201

Site-Based Partitioning and Repartitioning Techniques for Parallel PageRank Computation

Cataloged from PDF version of article.The PageRank algorithm is an important component in effective web search. At the core of this algorithm are repeated sparse matrix-vector multiplications where the involved web matrices grow in parallel with the growth of the web and are stored in a distributed manner due to space limitations. Hence, the PageRank computation, which is frequently repeated, must be performed in parallel with high-efficiency and low-preprocessing overhead while considering the initial distributed nature of the web matrices. Our contributions in this work are twofold. We first investigate the application of state-of-the-art sparse matrix partitioning models in order to attain high efficiency in parallel PageRank computations with a particular focus on reducing the preprocessing overhead they introduce. For this purpose, we evaluate two different compression schemes on the web matrix using the site information inherently available in links. Second, we consider the more realistic scenario of starting with an initially distributed data and extend our algorithms to cover the repartitioning of such data for efficient PageRank computation. We report performance results using our parallelization of a state-of-the-art PageRank algorithm on two different PC clusters with 40 and 64 processors. Experiments show that the proposed techniques achieve considerably high speedups while incurring a preprocessing overhead of several iterations (for some instances even less than a single iteration) of the underlying sequential PageRank algorithm. © 2011 IEEE

Algorithms and Software for the Analysis of Large Complex Networks

The work presented intersects three main areas, namely graph algorithmics, network science and applied software engineering. Each computational method discussed relates to one of the main tasks of data analysis: to extract structural features from network data, such as methods for community detection; or to transform network data, such as methods to sparsify a network and reduce its size while keeping essential properties; or to realistically model networks through generative models

GraphMineSuite: Enabling High-Performance and Programmable Graph Mining Algorithms with Set Algebra

We propose GraphMineSuite (GMS): the first benchmarking suite for graph mining that facilitates evaluating and constructing high-performance graph mining algorithms. First, GMS comes with a benchmark specification based on extensive literature review, prescribing representative problems, algorithms, and datasets. Second, GMS offers a carefully designed software platform for seamless testing of different fine-grained elements of graph mining algorithms, such as graph representations or algorithm subroutines. The platform includes parallel implementations of more than 40 considered baselines, and it facilitates developing complex and fast mining algorithms. High modularity is possible by harnessing set algebra operations such as set intersection and difference, which enables breaking complex graph mining algorithms into simple building blocks that can be separately experimented with. GMS is supported with a broad concurrency analysis for portability in performance insights, and a novel performance metric to assess the throughput of graph mining algorithms, enabling more insightful evaluation. As use cases, we harness GMS to rapidly redesign and accelerate state-of-the-art baselines of core graph mining problems: degeneracy reordering (by up to >2x), maximal clique listing (by up to >9x), k-clique listing (by 1.1x), and subgraph isomorphism (by up to 2.5x), also obtaining better theoretical performance bounds

GRAPHiQL: A graph intuitive query language for relational databases

Graph analytics is becoming increasingly popular, driving many important business applications from social network analysis to machine learning. Since most graph data is collected in a relational database, it seems natural to attempt to perform graph analytics within the relational environment. However, SQL, the query language for relational databases, makes it difficult to express graph analytics operations. This is because SQL requires programmers to think in terms of tables and joins, rather than the more natural representation of graphs as collections of nodes and edges. As a result, even relatively simple graph operations can require very complex SQL queries. In this paper, we present GRAPHiQL, an intuitive query language for graph analytics, which allows developers to reason in terms of nodes and edges. GRAPHiQL provides key graph constructs such as looping, recursion, and neighborhood operations. At runtime, GRAPHiQL compiles graph programs into efficient SQL queries that can run on any relational database. We demonstrate the applicability of GRAPHiQL on several applications and compare the performance of GRAPHiQL queries with those of Apache Giraph (a popular `vertex centric' graph programming language)