Taking advantage of hybrid systems for sparse direct solvers via task-based runtimes

The ongoing hardware evolution exhibits an escalation in the number, as well as in the heterogeneity, of computing resources. The pressure to maintain reasonable levels of performance and portability forces application developers to leave the traditional programming paradigms and explore alternative solutions. PaStiX is a parallel sparse direct solver, based on a dynamic scheduler for modern hierarchical manycore architectures. In this paper, we study the benefits and limits of replacing the highly specialized internal scheduler of the PaStiX solver with two generic runtime systems: PaRSEC and StarPU. The tasks graph of the factorization step is made available to the two runtimes, providing them the opportunity to process and optimize its traversal in order to maximize the algorithm efficiency for the targeted hardware platform. A comparative study of the performance of the PaStiX solver on top of its native internal scheduler, PaRSEC, and StarPU frameworks, on different execution environments, is performed. The analysis highlights that these generic task-based runtimes achieve comparable results to the application-optimized embedded scheduler on homogeneous platforms. Furthermore, they are able to significantly speed up the solver on heterogeneous environments by taking advantage of the accelerators while hiding the complexity of their efficient manipulation from the programmer.Comment: Heterogeneity in Computing Workshop (2014

Smart technologies for effective reconfiguration: the FASTER approach

Current and future computing systems increasingly require that their functionality stays flexible after the system is operational, in order to cope with changing user requirements and improvements in system features, i.e. changing protocols and data-coding standards, evolving demands for support of different user applications, and newly emerging applications in communication, computing and consumer electronics. Therefore, extending the functionality and the lifetime of products requires the addition of new functionality to track and satisfy the customers needs and market and technology trends. Many contemporary products along with the software part incorporate hardware accelerators for reasons of performance and power efficiency. While adaptivity of software is straightforward, adaptation of the hardware to changing requirements constitutes a challenging problem requiring delicate solutions. The FASTER (Facilitating Analysis and Synthesis Technologies for Effective Reconfiguration) project aims at introducing a complete methodology to allow designers to easily implement a system specification on a platform which includes a general purpose processor combined with multiple accelerators running on an FPGA, taking as input a high-level description and fully exploiting, both at design time and at run time, the capabilities of partial dynamic reconfiguration. The goal is that for selected application domains, the FASTER toolchain will be able to reduce the design and verification time of complex reconfigurable systems providing additional novel verification features that are not available in existing tool flows

Hybrid static/dynamic scheduling for already optimized dense matrix factorization

We present the use of a hybrid static/dynamic scheduling strategy of the task dependency graph for direct methods used in dense numerical linear algebra. This strategy provides a balance of data locality, load balance, and low dequeue overhead. We show that the usage of this scheduling in communication avoiding dense factorization leads to significant performance gains. On a 48 core AMD Opteron NUMA machine, our experiments show that we can achieve up to 64% improvement over a version of CALU that uses fully dynamic scheduling, and up to 30% improvement over the version of CALU that uses fully static scheduling. On a 16-core Intel Xeon machine, our hybrid static/dynamic scheduling approach is up to 8% faster than the version of CALU that uses a fully static scheduling or fully dynamic scheduling. Our algorithm leads to speedups over the corresponding routines for computing LU factorization in well known libraries. On the 48 core AMD NUMA machine, our best implementation is up to 110% faster than MKL, while on the 16 core Intel Xeon machine, it is up to 82% faster than MKL. Our approach also shows significant speedups compared with PLASMA on both of these systems

Doctor of Philosophy

dissertationMessage passing (MP) has gained a widespread adoption over the years, so much so, that even heterogeneous embedded multicore systems are running programs that are developed using message passing libraries. Such a phenomenon is a shift in computing practices, since, traditionally MP programs have been developed specifically for high performance computing. With growing importance and the complexity of MP programs in today's times, it becomes absolutely imperative to have formal tools and sound methodologies that can help reason about the correctness of the program. It has been demonstrated by many researchers in the area of concurrent program verification that a suitable strategy to verify programs which rely heavily on nondeterminism, is dynamic verification. Dynamic verification integrates the best features of testing and model checking. In the area of MP program verification, however, there have been only a handful of dynamic verifiers. These dynamic verifiers, despite their strengths, suffer from the explosion in execution scenarios. All existing dynamic verifiers, to our knowledge, exhaustively explore the nondeterministic choices in an MP program. It is apparent that an MP program with many nondeterministic constructs will quickly inundate such tools. This dissertation focuses on the problem of containing the exponential space of execution scenarios (or interleavings) while providing a soundness and completeness guarantee over safety properties of MP programs (specifically deadlocks). We present a predictive verification methodology and an associated framework, called MAAPED(Messaging Application Analysis with Predictive Error Discovery), that operates in polynomial time over MP programs to detect deadlocks among other safety property violations. In brief, we collect a single execution trace of an MP program and without re-running other execution schedules, reliably construct the artifacts necessary to predict any mishappening in an unexplored execution schedule with the aforementioned formal guarantee. The main contributions of the thesis are the following: The Functionally Irrelevant Barrier Algorithm to increase program productivity and ease in verification complexity. A sound pragmatic strategy to reduce the interleaving space of existing dynamic verifiers which is complete only for a certain class of MPI programs. A generalized matches-before ordering for MP programs. A predictive polynomial time verification framework as an alternate solution in the dynamic MP verification landscape. A soundness and completeness proof for the predictive framework's deadlock detection strategy for many formally characterized classes of MP programs. In the process of developing solutions that are mentioned above, we also collected important experiences relating to the development of dynamic verification schedulers. We present those experiences as a minor contribution of this thesis

Markov Decision Process Based Energy-Efficient On-Line Scheduling for Slice-Parallel Video Decoders on Multicore Systems

We consider the problem of energy-efficient on-line scheduling for slice-parallel video decoders on multicore systems. We assume that each of the processors are Dynamic Voltage Frequency Scaling (DVFS) enabled such that they can independently trade off performance for power, while taking the video decoding workload into account. In the past, scheduling and DVFS policies in multi-core systems have been formulated heuristically due to the inherent complexity of the on-line multicore scheduling problem. The key contribution of this report is that we rigorously formulate the problem as a Markov decision process (MDP), which simultaneously takes into account the on-line scheduling and per-core DVFS capabilities; the power consumption of the processor cores and caches; and the loss tolerant and dynamic nature of the video decoder's traffic. In particular, we model the video traffic using a Direct Acyclic Graph (DAG) to capture the precedence constraints among frames in a Group of Pictures (GOP) structure, while also accounting for the fact that frames have different display/decoding deadlines and non-deterministic decoding complexities. The objective of the MDP is to minimize long-term power consumption subject to a minimum Quality of Service (QoS) constraint related to the decoder's throughput. Although MDPs notoriously suffer from the curse of dimensionality, we show that, with appropriate simplifications and approximations, the complexity of the MDP can be mitigated. We implement a slice-parallel version of H.264 on a multiprocessor ARM (MPARM) virtual platform simulator, which provides cycle-accurate and bus signal-accurate simulation for different processors. We use this platform to generate realistic video decoding traces with which we evaluate the proposed on-line scheduling algorithm in Matlab

Exploiting asymmetric multi-core systems with flexible system software

Asymmetric multi-cores (AMCs) are a successful architectural solution for both mobile devices and supercomputers. These architectures combine different types of processing cores designed at different performance and power optimization points, thus exposing a performance-power trade-off. By maintaining two types of cores, AMCs are able to provide high performance under the facility power budget. However, there are significant challenges when using AMCs such as scheduling and load balancing. This thesis initially explores the potential of AMCs when executing current HPC applications and searches for the most appropriate execution model. Specifically we evaluate several execution models on an Arm big.LITTLE AMC using the PARSEC benchmark suite that includes representative HPC applications. We compare schedulers at the user, OS and runtime system levels, using both static and dynamic options and multiple configurations, and assess the impact of these options on the well-known problem of balancing the load across AMCs. Our results demonstrate that scheduling is more effective when it takes place in the runtime system as it improves the user-level scheduling by 23%, while the heterogeneous-aware OS scheduling solution improves the user-level scheduling by 10%. Following this outcome, this thesis focuses on increasing performance of AMC systems by improving scheduling in the runtime system level. Scheduling in the runtime system level is provided by the use of task-based parallel programming models. These programming models offer programming flexibility as they consist of an interface and a runtime system to manage the underlying resources and threads. In this thesis we improve scheduling with task-based programming models by providing three novel task schedulers for AMCs. These dynamic scheduling policies reduce total execution time either by detecting the longest or the critical path of the dynamic task dependency graph of the application. They use dynamic scheduling and information discoverable during execution, fact that makes them implementable and functional without the need of off-line profiling. In our evaluation we compare these scheduling approaches with an existing state-of the art heterogeneous scheduler and we track their improvement over a FIFO baseline scheduler. We show that the heterogeneous schedulers improve the baseline by up to 1.45x on a real 8-core AMC and up to 2.1x on a simulated 32-core AMC. Another enhancement we provide in task-based programming models is the adaptability to fine grained parallelism. The increasing number of cores on modern CMPs is pushing research towards the use of fine grained workloads, which is an important challenge for task-based programming models. Our study makes the observation that task creation becomes a bottleneck when executing fine grained workloads with task-based programming models. As the number of cores increases, the time spent generating tasks is becoming more critical to the entire execution. To overcome this issue, we propose TaskGenX. TaskGenX minimizes task creation overheads and relies both on the runtime system and a dedicated hardware. On the runtime system side, TaskGenX decouples the task creation from the other runtime activities. It then transfers this part of the runtime to a specialized hardware. From our evaluation using 11 HPC workloads on both symmetric and AMC systems, we obtain performance improvements up to 15x, averaging to 3.1x over the baseline. Finally, this thesis presents a showcase for a real-time CPU scheduler with the goal to increase the frames per second (FPS) of the game-play on mobile devices with AMC systems. We design and implement the RTS scheduler in the Android framework. RTS provides an efficient scheduling policy that takes into account the current temperature of the system to perform task migration. RTS solution increases the median FPS of the baseline mechanisms by up to 7.5% and at the same time it maintains temperature stable.Los procesadores multinúcleos asimétricos (AMC) son una solución arquitectónica exitosa para dispositivos móviles y supercomputadores. Estas arquitecturas combinan diferentes tipos de núcleos de procesamiento diseñados con diferentes propiedades de rendimiento y potencia. Al mantener dos o más tipos de núcleos, los AMCs pueden proporcionar un alto rendimiento con un consumo bajo de energía de las infraestructuras. Sin embargo, existen importantes desafíos al usar los AMC, como la programación y el equilibrio de carga. Esta tesis explora inicialmente el potencial de los AMC al ejecutar aplicaciones actuales de Computacion de Alto Rendimiento (HPC) y busca el modelo de ejecución más apropiado para ellas. Específicamente evaluamos varios modelos de ejecución en un procesador asimétrico Arm big.LITTLE utilizando las aplicaciones PARSEC que son aplicaciones representativas de HPC. En este trabajo se compara la programación en los niveles de usuario, sistema operativo y librería y evaluamos el impacto de estas opciones en el conocido problema de equilibrar la carga entre los AMCs. Nuestros resultados demuestran que la programación es más efectiva cuando se lleva a cabo en el nivel del runtime, ya que mejora la programación del nivel de usuario en un 23%, mientras que la solución de programación del sistema operativo heterogéneo mejora la programación del nivel de usuario en un 10%. Siguiendo este resultado, esta tesis se centra en aumentar el rendimiento de los sistemas AMC mejorando la programación al nivel de librería. La programación en este nivel se proporciona mediante el uso de Modelos de Programación Paralelos Basados en Tareas (MPBT). Estos modelos de programación ofrecen flexibilidad de programación, ya que consisten en una interfaz y un runtime para administrar los recursos e hilos subyacentes. En esta tesis, mejoramos la programación con MPBT al proporcionar tres nuevos planificadores de tareas para AMCs. Estos planificadores dinámicos reducen el tiempo total de ejecución ya sea detectando la camino más largo o el camino crítico del grafo de dependencia de tareas de la aplicación, que es generado dinámicamente. En nuestra evaluación, comparamos estos planificadores con un planificador heterogéneo existente y demonstramos su mejora sobre un planificador FIFO. Mostramos que los planificadores heterogéneos mejoran el planificador FIFO en hasta 1.45x en un AMC real de 8 núcleos y hasta 2.1x en un AMC simulado de 32 núcleos. Otra contribución en los MPBT es la adaptabilidad al paralelismo de grano fino. El creciente número de núcleos en los chip multinúcleos modernos está empujando la investigación hacia el uso de cargas de trabajo de grano fino, que es un desafío importante para los MPBT. Nuestro estudio observa que la creación de tareas bloquea la ejecución con cargas de trabajo de grano fino con MPBT. Cuando el número de núcleos aumenta, el tiempo empleado en generar tareas pasa a ser más crítico para toda la ejecución. Nuestra solución es TaskGenX, que minimiza los costes de creación de tareas y se basa en una extensión del runtime y en un hardware dedicado. En el runtime, TaskGenX desacopla la creación de tareas de las otras actividades del runtime, ejecutando esta actividad en un hardware especializado. Evaluamos 11 aplicaciones de HPC con TaskGenX en sistemas simétricos y AMC y obtenemos mejoras de rendimiento de hasta 15x, con un promedio de 3.1x sobre la implementación de referencia. Finalmente, esta tesis presenta un planificador de CPU con el objetivo de aumentar los fotogramas por segundo (FPS) para juegos en dispositivos móviles con sistemas AMC. Diseñamos e implementamos el planificador de Real-Time Scheduler (RTS) en Android. El RTS proporciona una política de programación eficiente que tiene en cuenta la temperatura actual del sistema para realizar la migración de tareas. La solución RTS aumenta la FPS mediana de los mecanismos de referenci

Exploiting asymmetric multi-core systems with flexible system software

Asymmetric multi-cores (AMCs) are a successful architectural solution for both mobile devices and supercomputers. These architectures combine different types of processing cores designed at different performance and power optimization points, thus exposing a performance-power trade-off. By maintaining two types of cores, AMCs are able to provide high performance under the facility power budget. However, there are significant challenges when using AMCs such as scheduling and load balancing. This thesis initially explores the potential of AMCs when executing current HPC applications and searches for the most appropriate execution model. Specifically we evaluate several execution models on an Arm big.LITTLE AMC using the PARSEC benchmark suite that includes representative HPC applications. We compare schedulers at the user, OS and runtime system levels, using both static and dynamic options and multiple configurations, and assess the impact of these options on the well-known problem of balancing the load across AMCs. Our results demonstrate that scheduling is more effective when it takes place in the runtime system as it improves the user-level scheduling by 23%, while the heterogeneous-aware OS scheduling solution improves the user-level scheduling by 10%. Following this outcome, this thesis focuses on increasing performance of AMC systems by improving scheduling in the runtime system level. Scheduling in the runtime system level is provided by the use of task-based parallel programming models. These programming models offer programming flexibility as they consist of an interface and a runtime system to manage the underlying resources and threads. In this thesis we improve scheduling with task-based programming models by providing three novel task schedulers for AMCs. These dynamic scheduling policies reduce total execution time either by detecting the longest or the critical path of the dynamic task dependency graph of the application. They use dynamic scheduling and information discoverable during execution, fact that makes them implementable and functional without the need of off-line profiling. In our evaluation we compare these scheduling approaches with an existing state-of the art heterogeneous scheduler and we track their improvement over a FIFO baseline scheduler. We show that the heterogeneous schedulers improve the baseline by up to 1.45x on a real 8-core AMC and up to 2.1x on a simulated 32-core AMC. Another enhancement we provide in task-based programming models is the adaptability to fine grained parallelism. The increasing number of cores on modern CMPs is pushing research towards the use of fine grained workloads, which is an important challenge for task-based programming models. Our study makes the observation that task creation becomes a bottleneck when executing fine grained workloads with task-based programming models. As the number of cores increases, the time spent generating tasks is becoming more critical to the entire execution. To overcome this issue, we propose TaskGenX. TaskGenX minimizes task creation overheads and relies both on the runtime system and a dedicated hardware. On the runtime system side, TaskGenX decouples the task creation from the other runtime activities. It then transfers this part of the runtime to a specialized hardware. From our evaluation using 11 HPC workloads on both symmetric and AMC systems, we obtain performance improvements up to 15x, averaging to 3.1x over the baseline. Finally, this thesis presents a showcase for a real-time CPU scheduler with the goal to increase the frames per second (FPS) of the game-play on mobile devices with AMC systems. We design and implement the RTS scheduler in the Android framework. RTS provides an efficient scheduling policy that takes into account the current temperature of the system to perform task migration. RTS solution increases the median FPS of the baseline mechanisms by up to 7.5% and at the same time it maintains temperature stable.Los procesadores multinúcleos asimétricos (AMC) son una solución arquitectónica exitosa para dispositivos móviles y supercomputadores. Estas arquitecturas combinan diferentes tipos de núcleos de procesamiento diseñados con diferentes propiedades de rendimiento y potencia. Al mantener dos o más tipos de núcleos, los AMCs pueden proporcionar un alto rendimiento con un consumo bajo de energía de las infraestructuras. Sin embargo, existen importantes desafíos al usar los AMC, como la programación y el equilibrio de carga. Esta tesis explora inicialmente el potencial de los AMC al ejecutar aplicaciones actuales de Computacion de Alto Rendimiento (HPC) y busca el modelo de ejecución más apropiado para ellas. Específicamente evaluamos varios modelos de ejecución en un procesador asimétrico Arm big.LITTLE utilizando las aplicaciones PARSEC que son aplicaciones representativas de HPC. En este trabajo se compara la programación en los niveles de usuario, sistema operativo y librería y evaluamos el impacto de estas opciones en el conocido problema de equilibrar la carga entre los AMCs. Nuestros resultados demuestran que la programación es más efectiva cuando se lleva a cabo en el nivel del runtime, ya que mejora la programación del nivel de usuario en un 23%, mientras que la solución de programación del sistema operativo heterogéneo mejora la programación del nivel de usuario en un 10%. Siguiendo este resultado, esta tesis se centra en aumentar el rendimiento de los sistemas AMC mejorando la programación al nivel de librería. La programación en este nivel se proporciona mediante el uso de Modelos de Programación Paralelos Basados en Tareas (MPBT). Estos modelos de programación ofrecen flexibilidad de programación, ya que consisten en una interfaz y un runtime para administrar los recursos e hilos subyacentes. En esta tesis, mejoramos la programación con MPBT al proporcionar tres nuevos planificadores de tareas para AMCs. Estos planificadores dinámicos reducen el tiempo total de ejecución ya sea detectando la camino más largo o el camino crítico del grafo de dependencia de tareas de la aplicación, que es generado dinámicamente. En nuestra evaluación, comparamos estos planificadores con un planificador heterogéneo existente y demonstramos su mejora sobre un planificador FIFO. Mostramos que los planificadores heterogéneos mejoran el planificador FIFO en hasta 1.45x en un AMC real de 8 núcleos y hasta 2.1x en un AMC simulado de 32 núcleos. Otra contribución en los MPBT es la adaptabilidad al paralelismo de grano fino. El creciente número de núcleos en los chip multinúcleos modernos está empujando la investigación hacia el uso de cargas de trabajo de grano fino, que es un desafío importante para los MPBT. Nuestro estudio observa que la creación de tareas bloquea la ejecución con cargas de trabajo de grano fino con MPBT. Cuando el número de núcleos aumenta, el tiempo empleado en generar tareas pasa a ser más crítico para toda la ejecución. Nuestra solución es TaskGenX, que minimiza los costes de creación de tareas y se basa en una extensión del runtime y en un hardware dedicado. En el runtime, TaskGenX desacopla la creación de tareas de las otras actividades del runtime, ejecutando esta actividad en un hardware especializado. Evaluamos 11 aplicaciones de HPC con TaskGenX en sistemas simétricos y AMC y obtenemos mejoras de rendimiento de hasta 15x, con un promedio de 3.1x sobre la implementación de referencia. Finalmente, esta tesis presenta un planificador de CPU con el objetivo de aumentar los fotogramas por segundo (FPS) para juegos en dispositivos móviles con sistemas AMC. Diseñamos e implementamos el planificador de Real-Time Scheduler (RTS) en Android. El RTS proporciona una política de programación eficiente que tiene en cuenta la temperatura actual del sistema para realizar la migración de tareas. La solución RTS aumenta la FPS mediana de los mecanismos de referenciaPostprint (published version

Parallelism-Aware Memory Interference Delay Analysis for COTS Multicore Systems

In modern Commercial Off-The-Shelf (COTS) multicore systems, each core can generate many parallel memory requests at a time. The processing of these parallel requests in the DRAM controller greatly affects the memory interference delay experienced by running tasks on the platform. In this paper, we model a modern COTS multicore system which has a nonblocking last-level cache (LLC) and a DRAM controller that prioritizes reads over writes. To minimize interference, we focus on LLC and DRAM bank partitioned systems. Based on the model, we propose an analysis that computes a safe upper bound for the worst-case memory interference delay. We validated our analysis on a real COTS multicore platform with a set of carefully designed synthetic benchmarks as well as SPEC2006 benchmarks. Evaluation results show that our analysis is more accurately capture the worst-case memory interference delay and provides safer upper bounds compared to a recently proposed analysis which significantly under-estimate the delay.Comment: Technical Repor