A computational ecosystem to support eHealth Knowledge Discovery technologies in Spanish

The massive amount of biomedical information published online requires the development of automatic knowledge discovery technologies to effectively make use of this available content. To foster and support this, the research community creates linguistic resources, such as annotated corpora, and designs shared evaluation campaigns and academic competitive challenges. This work describes an ecosystem that facilitates research and development in knowledge discovery in the biomedical domain, specifically in Spanish language. To this end, several resources are developed and shared with the research community, including a novel semantic annotation model, an annotated corpus of 1045 sentences, and computational resources to build and evaluate automatic knowledge discovery techniques. Furthermore, a research task is defined with objective evaluation criteria, and an online evaluation environment is setup and maintained, enabling researchers interested in this task to obtain immediate feedback and compare their results with the state-of-the-art. As a case study, we analyze the results of a competitive challenge based on these resources and provide guidelines for future research. The constructed ecosystem provides an effective learning and evaluation environment to encourage research in knowledge discovery in Spanish biomedical documents.This research has been partially supported by the University of Alicante and University of Havana, the Generalitat Valenciana (Conselleria d’Educació, Investigació, Cultura i Esport) and the Spanish Government through the projects SIIA (PROMETEO/2018/089, PROMETEU/2018/089) and LIVING-LANG (RTI2018-094653-B-C22)

Cold-start universal information extraction

Who? What? When? Where? Why? are fundamental questions asked when gathering knowledge about and understanding a concept, topic, or event. The answers to these questions underpin the key information conveyed in the overwhelming majority, if not all, of language-based communication. At the core of my research in Information Extraction (IE) is the desire to endow machines with the ability to automatically extract, assess, and understand text in order to answer these fundamental questions. IE has been serving as one of the most important components for many downstream natural language processing (NLP) tasks, such as knowledge base completion, machine reading comprehension, machine translation and so on. The proliferation of the Web also intensifies the need of dealing with enormous amount of unstructured data from various sources, such as languages, genres and domains. When building an IE system, the conventional pipeline is to (1) ask expert linguists to rigorously define a target set of knowledge types we wish to extract by examining a large data set, (2) collect resources and human annotations for each type, and (3) design features and train machine learning models to extract knowledge elements. In practice, this process is very expensive as each step involves extensive human effort which is not always available, for example, to specify the knowledge types for a particular scenario, both consumers and expert linguists need to examine a lot of data from that domain and write detailed annotation guidelines for each type. Hand-crafted schemas, which define the types and complex templates of the expected knowledge elements, often provide low coverage and fail to generalize to new domains. For example, none of the traditional event extraction programs, such as ACE (Automatic Content Extraction) and TAC-KBP, include "donation'' and "evacuation'' in their schemas in spite of their potential relevance to natural disaster management users. Additionally, these approaches are highly dependent on linguistic resources and human labeled data tuned to pre-defined types, so they suffer from poor scalability and portability when moving to a new language, domain, or genre. The focus of this thesis is to develop effective theories and algorithms for IE which not only yield satisfactory quality by incorporating prior linguistic and semantic knowledge, but also greater portability and scalability by moving away from the high cost and narrow focus of large-scale manual annotation. This thesis opens up a new research direction called Cold-Start Universal Information Extraction, where the full extraction and analysis starts from scratch and requires little or no prior manual annotation or pre-defined type schema. In addition to this new research paradigm, we also contribute effective algorithms and models towards resolving the following three challenges: How can machines extract knowledge without any pre-defined types or any human annotated data? We develop an effective bottom-up and unsupervised Liberal Information Extraction framework based on the hypothesis that the meaning and underlying knowledge conveyed by linguistic expressions is usually embodied by their usages in language, which makes it possible to automatically induces a type schema based on rich contextual representations of all knowledge elements by combining their symbolic and distributional semantics using unsupervised hierarchical clustering. How can machines benefit from available resources, e.g., large-scale ontologies or existing human annotations? My research has shown that pre-defined types can also be encoded by rich contextual or structured representations, through which knowledge elements can be mapped to their appropriate types. Therefore, we design a weakly supervised Zero-shot Learning and a Semi-Supervised Vector Quantized Variational Auto-Encoder approach that frames IE as a grounding problem instead of classification, where knowledge elements are grounded into any types from an extensible and large-scale target ontology or induced from the corpora, with available annotations for a few types. How can IE approaches be extent to low-resource languages without any extra human effort? There are more than 6000 living languages in the real world while public gold-standard annotations are only available for a few dominant languages. To facilitate the adaptation of these IE frameworks to other languages, especially low resource languages, a Multilingual Common Semantic Space is further proposed to serve as a bridge for transferring existing resources and annotated data from dominant languages to more than 300 low resource languages. Moreover, a Multi-Level Adversarial Transfer framework is also designed to learn language-agnostic features across various languages

On the Use of Parsing for Named Entity Recognition

[Abstract] Parsing is a core natural language processing technique that can be used to obtain the structure underlying sentences in human languages. Named entity recognition (NER) is the task of identifying the entities that appear in a text. NER is a challenging natural language processing task that is essential to extract knowledge from texts in multiple domains, ranging from financial to medical. It is intuitive that the structure of a text can be helpful to determine whether or not a certain portion of it is an entity and if so, to establish its concrete limits. However, parsing has been a relatively little-used technique in NER systems, since most of them have chosen to consider shallow approaches to deal with text. In this work, we study the characteristics of NER, a task that is far from being solved despite its long history; we analyze the latest advances in parsing that make its use advisable in NER settings; we review the different approaches to NER that make use of syntactic information; and we propose a new way of using parsing in NER based on casting parsing itself as a sequence labeling task.Xunta de Galicia; ED431C 2020/11Xunta de Galicia; ED431G 2019/01This work has been funded by MINECO, AEI and FEDER of UE through the ANSWER-ASAP project (TIN2017-85160-C2-1-R); and by Xunta de Galicia through a Competitive Reference Group grant (ED431C 2020/11). CITIC, as Research Center of the Galician University System, is funded by the Consellería de Educación, Universidade e Formación Profesional of the Xunta de Galicia through the European Regional Development Fund (ERDF/FEDER) with 80%, the Galicia ERDF 2014-20 Operational Programme, and the remaining 20% from the Secretaría Xeral de Universidades (Ref. ED431G 2019/01). Carlos Gómez-Rodríguez has also received funding from the European Research Council (ERC), under the European Union’s Horizon 2020 research and innovation programme (FASTPARSE, Grant No. 714150)

Graph-to-Graph Translations To Augment Abstract Meaning Representation Tense And Aspect

HonorsCognitive ScienceUniversity of Michiganhttp://deepblue.lib.umich.edu/bitstream/2027.42/169387/1/bakalm.pd