Deformable Model for 3D Intramodal Nonrigid Breast Image Registration with Fiducial Skin Markers

We implemented a new approach to intramodal non-rigid 3D breast image registration. Our method uses fiducial skin markers (FSM) placed on the breast surface. After determining the displacements of FSM, finite element method (FEM) is used to distribute the markers’ displacements linearly over the entire breast volume using the analogy between the orthogonal components of the displacement field and a steady state heat transfer (SSHT). It is valid because the displacement field in x, y and z direction and a SSHT problem can both be modeled using LaPlace’s equation and the displacements are analogous to temperature differences in SSHT. It can be solved via standard heat conduction FEM software with arbitrary conductivity of surface elements significantly higher than that of volume elements. After determining the displacements of the mesh nodes over the entire breast volume, moving breast volume is registered to target breast volume using an image warping algorithm. Very good quality of the registration was obtained. Following similarity measurements were estimated: Normalized Mutual Information (NMI), Normalized Correlation Coefficient (NCC) and Sum of Absolute Valued Differences (SAVD). We also compared our method with rigid registration technique

Multimodal breast imaging: Registration, visualization, and image synthesis

The benefit of registration and fusion of functional images with anatomical images is well appreciated in the advent of combined positron emission tomography and x-ray computed tomography scanners (PET/CT). This is especially true in breast cancer imaging, where modalities such as high-resolution and dynamic contrast-enhanced magnetic resonance imaging (MRI) and F-18-FDG positron emission tomography (PET) have steadily gained acceptance in addition to x-ray mammography, the primary detection tool. The increased interest in combined PET/MRI images has facilitated the demand for appropriate registration and fusion algorithms. A new approach to MRI-to-PET non-rigid breast image registration was developed and evaluated based on the location of a small number of fiducial skin markers (FSMs) visible in both modalities. The observed FSM displacement vectors between MRI and PET, distributed piecewise linearly over the breast volume, produce a deformed Finite-Element mesh that reasonably approximates non-rigid deformation of the breast tissue between the MRI and PET scans. The method does not require a biomechanical breast tissue model, and is robust and fast. The method was evaluated both qualitatively and quantitatively on patients and a deformable breast phantom. The procedure yields quality images with average target registration error (TRE) below 4 mm. The importance of appropriately jointly displaying (i.e. fusing) the registered images has often been neglected and underestimated. A combined MRI/PET image has the benefits of directly showing the spatial relationships between the two modalities, increasing the sensitivity, specificity, and accuracy of diagnosis. Additional information on morphology and on dynamic behavior of the suspicious lesion can be provided, allowing more accurate lesion localization including mapping of hyper- and hypo-metabolic regions as well as better lesion-boundary definition, improving accuracy when grading the breast cancer and assessing the need for biopsy. Eight promising fusion-for-visualization techniques were evaluated by radiologists from University Hospital, in Syracuse, NY. Preliminary results indicate that the radiologists were better able to perform a series of tasks when reading the fused PET/MRI data sets using color tables generated by a newly developed genetic algorithm, as compared to other commonly used schemes. The lack of a known ground truth hinders the development and evaluation of new algorithms for tasks such as registration and classification. A preliminary mesh-based breast phantom containing 12 distinct tissue classes along with tissue properties necessary for the simulation of dynamic positron emission tomography scans was created. The phantom contains multiple components which can be separately manipulated, utilizing geometric transformations, to represent populations or a single individual being imaged in multiple positions. This phantom will support future multimodal breast imaging work

Una contribución al registrado articulado: aplicación a la determinación de la maduración ósea mediante análisis de imágenes radiográficas

Este trabajo se plantea de un modo inédito de registrado elástico de imágenes médicas llamado “registrado articulado”. Está basado en un modelo anatómico formado por puntos de control anatómicos conectados entre sí en el que cada hueso es registrado de forma afín y los tejidos blandos son registrados de forma elástica, manteniendo las estructuras óseas largas rectas mientras que la transformación a lo largo de toda la imagen es continua y suave. Se aplica el método articulado en el registrado de radiografías de la mano superando a otros métodos alternativos. Además hemos generalizado al marco de registrado poliafín Log-Euclídeo de forma que permita estructuras articuladas. Se propone también una metodología inédita basada en registrado de imagen para determinar de forma automática la edad ósea siguiendo el método TW3. Este método realiza el registrado de la radiografía de la mano como un paso previo. Proponemos dos clasificadores diferentes y comparamos sus resultados con los diagnósticos realizados por dos especialistas pediátricos; la metodología seguida nos lleva a la conclusión de que nuestro método automático obtiene resultados comparables a los diagnósticos inter-observador.Departamento de Teoría de la Señal y Comunicaciones e Ingenieria Telemátic

Design, development and use of a deformable breast phantom to assess the relationship between thickness and lesion visibility in full field digital mammography

Aim of research:This research aimed to design and develop a synthetic anthropomorphic breast phantom with cancer mimicking lesions and use this phantom to assess the relationship between lesion visibility and breast thickness in mammography. Due to the risk of cancer induction associated with the use of ionising radiation on breast tissues, experiments on human breast tissue was not practical. Therefore, a synthetic anthropomorphic breast phantom with cancer mimicking lesions was needed to be designed and developed in order to provide a safe platform to evaluate the relationship between lesion visibility and breast thickness in mammography. Method: As part of this research custom Polyvinyl alcohol (PVAL) breast phantoms with embedded PVAL lesions doped with contrast agent were fabricated and utilised. These breast phantoms exhibited mechanical and X-ray properties which were similar to female breast/breast cancer tissues. In order for this research to be useful for human studies, patient safety factors have constrained the extent of this research. These factors include compression force and radiation dose. After acquiring mammograms of phantoms with varying thicknesses, the image quality of the embedded lesions were evaluated both perceptually and mathematically.The two-alternative forced choice (2AFC) perceptual method was used to evaluate image quality of the lesions. For mathematical evaluation the following methods were utilised: line profile analysis, contrast-to noise ratio (CNR), signal-to noise ratio (SNR) and figure of merit (FOM).Results: The results of the visual perception analysis of the mammograms demonstrate that as breast compressed thickness reduces the image quality increases. Additionally, the results display a correlation in the reduction in the level of noise with the reduction in breast thickness. This noise reduction was also demonstrated in the profile plots of the lesions. The line profile analysis, in agreement with visual perception, shows improvement of sharpness of the lesion edge in relation to the reduction of the phantom thickness. The intraclass correlation coefficient (ICC) has shown a great consistency and agreement among the observers for visibility, sharpness, contrast and noise. The ICC results are not as conclusive for the size criterion. Mathematical evaluation results also show a correlation of improvement in the image quality with the reduction in breast thickness. The results show that for the measures CNR, SNR, and FOM, the increase in image quality has a threshold after which the image quality ceases to improve and instead begins to reduce. CNR and FOM dropped when the breast phantom thickness was reduced approximately 40% of its initial thickness. This consistently happened at the point where the filter changed from rhodium (Rh) to molybdenum (Mo). Conclusion: This breast phantom study successfully designed and developed an anthropomorphic compressible breast phantom with cancer mimicking lesions with mechanical and X-ray properties similar to human breast tissue. This study also demonstrates that as breast compressed thickness reduces the visibility of the perceived lesion increases. The radiation dose generally decreases up to the point that the filter changes from rhodium to molybdenum. After this point, the radiation dose increases regardless of the phantom thickness. The results from this thesis are likely to have implications for clinical practice, as they support the need for compression/thickness reduction to enhance lesion visibilit