Semantic technologies: from niche to the mainstream of Web 3? A comprehensive framework for web Information modelling and semantic annotation

Context: Web information technologies developed and applied in the last decade have considerably changed the way web applications operate and have revolutionised information management and knowledge discovery. Social technologies, user-generated classification schemes and formal semantics have a far-reaching sphere of influence. They promote collective intelligence, support interoperability, enhance sustainability and instigate innovation. Contribution: The research carried out and consequent publications follow the various paradigms of semantic technologies, assess each approach, evaluate its efficiency, identify the challenges involved and propose a comprehensive framework for web information modelling and semantic annotation, which is the thesis’ original contribution to knowledge. The proposed framework assists web information modelling, facilitates semantic annotation and information retrieval, enables system interoperability and enhances information quality. Implications: Semantic technologies coupled with social media and end-user involvement can instigate innovative influence with wide organisational implications that can benefit a considerable range of industries. The scalable and sustainable business models of social computing and the collective intelligence of organisational social media can be resourcefully paired with internal research and knowledge from interoperable information repositories, back-end databases and legacy systems. Semantified information assets can free human resources so that they can be used to better serve business development, support innovation and increase productivity

The lifewatch approach to the exploration of distributed species information

© 2014 Daniel Fuentes, Nicola Fiore. This paper introduces a new method of automatically extracting, integrating and presenting information regarding species from the most relevant online taxonomic resources. First, the information is extracted and joined using data wrappers and integration solutions. Ten, an analytical tool is used to provide a visual representation of the data. Te information is then integrated into a user friendly content management system. Te proposal has been implemented using data from the Global Biodiversity Information Facility (GBIF), the Catalogue of Life (CoL), the World Register of Marine Species (WoRMS), the Integrated Taxonomic Information System (ITIS) and the Global Names Index (GNI). Te approach improves data quality, avoiding taxonomic and nomenclature errors whilst increasing the availability and accessibility of the information.Peer Reviewe

Modeling Faceted Browsing with Category Theory for Reuse and Interoperability

Faceted browsing (also called faceted search or faceted navigation) is an exploratory search model where facets assist in the interactive navigation of search results. Facets are attributes that have been assigned to describe resources being explored; a faceted taxonomy is a collection of facets provided by the interface and is often organized as sets, hierarchies, or graphs. Faceted browsing has become ubiquitous with modern digital libraries and online search engines, yet the process is still difficult to abstractly model in a manner that supports the development of interoperable and reusable interfaces. We propose category theory as a theoretical foundation for faceted browsing and demonstrate how the interactive process can be mathematically abstracted in order to support the development of reusable and interoperable faceted systems. Existing efforts in facet modeling are based upon set theory, formal concept analysis, and light-weight ontologies, but in many regards they are implementations of faceted browsing rather than a specification of the basic, underlying structures and interactions. We will demonstrate that category theory allows us to specify faceted objects and study the relationships and interactions within a faceted browsing system. Resulting implementations can then be constructed through a category-theoretic lens using these models, allowing abstract comparison and communication that naturally support interoperability and reuse. In this context, reuse and interoperability are at two levels: between discrete systems and within a single system. Our model works at both levels by leveraging category theory as a common language for representation and computation. We will establish facets and faceted taxonomies as categories and will demonstrate how the computational elements of category theory, including products, merges, pushouts, and pullbacks, extend the usefulness of our model. More specifically, we demonstrate that categorical constructions such as the pullback and pushout operations can help organize and reorganize facets; these operations in particular can produce faceted views containing relationships not found in the original source taxonomy. We show how our category-theoretic model of facets relates to database schemas and discuss how this relationship assists in implementing the abstractions presented. We give examples of interactive interfaces from the biomedical domain to help illustrate how our abstractions relate to real-world requirements while enabling systematic reuse and interoperability. We introduce DELVE (Document ExpLoration and Visualization Engine), our framework for developing interactive visualizations as modular Web-applications in order to assist researchers with exploratory literature search. We show how facets relate to and control visualizations; we give three examples of text visualizations that either contain or interact with facets. We show how each of these visualizations can be represented with our model and demonstrate how our model directly informs implementation. With our general framework for communicating consistently about facets at a high level of abstraction, we enable the construction of interoperable interfaces and enable the intelligent reuse of both existing and future efforts

Ontology mapping for semantically enabled applications

In this review, we provide a summary of recent progress in ontology mapping (OM) at a crucial time when biomedical research is under a deluge of an increasing amount and variety of data. This is particularly important for realising the full potential of semantically enabled or enriched applications and for meaningful insights, such as drug discovery, using machine-learning technologies. We discuss challenges and solutions for better ontology mappings, as well as how to select ontologies before their application. In addition, we describe tools and algorithms for ontology mapping, including evaluation of tool capability and quality of mappings. Finally, we outline the requirements for an ontology mapping service (OMS) and the progress being made towards implementation of such sustainable services

On relating functional modeling approaches: abstracting functional models from behavioral models

This paper presents a survey of functional modeling approaches and describes a strategy to establish functional knowledge exchange between them. This survey is focused on a comparison of function meanings and representations. It is argued that functions represented as input-output flow transformations correspond to behaviors in the approaches that characterize functions as intended behaviors. Based on this result a strategy is presented to relate the different meanings of function between the approaches, establishing functional knowledge exchange between them. It is shown that this strategy is able to preserve more functional information than the functional knowledge exchange methodology of Kitamura, Mizoguchi, and co-workers. The strategy proposed here consists of two steps. In step one, operation-on-flow functions are translated into behaviors. In step two, intended behavior functions are derived from behaviors. The two-step strategy and its benefits are demonstrated by relating functional models of a power screwdriver between methodologies

Semantic enrichment for enhancing LAM data and supporting digital humanities. Review article

With the rapid development of the digital humanities (DH) field, demands for historical and cultural heritage data have generated deep interest in the data provided by libraries, archives, and museums (LAMs). In order to enhance LAM data’s quality and discoverability while enabling a self-sustaining ecosystem, “semantic enrichment” becomes a strategy increasingly used by LAMs during recent years. This article introduces a number of semantic enrichment methods and efforts that can be applied to LAM data at various levels, aiming to support deeper and wider exploration and use of LAM data in DH research. The real cases, research projects, experiments, and pilot studies shared in this article demonstrate endless potential for LAM data, whether they are structured, semi-structured, or unstructured, regardless of what types of original artifacts carry the data. Following their roadmaps would encourage more effective initiatives and strengthen this effort to maximize LAM data’s discoverability, use- and reuse-ability, and their value in the mainstream of DH and Semantic Web

Systems Interoperability Types: A Tertiary Study

Interoperability has been a focus of attention over at least four decades, with the emergence of several interoperability types (or levels), diverse models, frameworks, and solutions, also as a result of a continuous effort from different domains. The current heterogeneity in technologies such as blockchain, IoT and new application domains such as Industry 4.0 brings not only new interaction possibilities but also challenges for interoperability. Moreover, confusion and ambiguity in the current understanding of interoperability types exist, hampering stakeholders' communication and decision making. This work presents an updated panorama of software-intensive systems interoperability with particular attention to its types. For this, we conducted a tertiary study that scrutinized 37 secondary studies published from 2012 to 2023, from which we found 36 interoperability types associated with 117 different definitions, besides 13 interoperability models and six frameworks in various domains. This panorama reveals that the concern with interoperability has migrated from technical to social-technical issues going beyond the software systems' boundary and still requiring solving many open issues. We also address the urgent actions and also potential research opportunities to leverage interoperability as a multidisciplinary research field to achieve low-coupled, cost-effective, and interoperable systems.Comment: 33 page

User driven modelling: Visualisation and systematic interaction for end-user programming with tree-based structures

This thesis addresses certain problems encountered by teams of engineers when modelling complex structures and processes subject to cost and other resource constraints. The cost of a structure or process may be ‘read off’ its specifying model, but the language in which the model is expressed (e.g. CAD) and the language in which resources may be modelled (e.g. spreadsheets) are not naturally compatible. This thesis demonstrates that a number of intermediate steps may be introduced which enable both meaningful translation from one conceptual view to another as well as meaningful collaboration between team members. The work adopts a diagrammatic modelling approach as a natural one in an engineering context when seeking to establish a shared understanding of problems.Thus, the research question to be answered in this thesis is: ‘To what extent is it possible to improve user-driven software development through interaction with diagrams and without requiring users to learn particular computer languages?’ The goal of the research is to improve collaborative software development through interaction with diagrams, thereby minimising the need for end-users to code directly. To achieve this aim a combination of the paradigms of End-User Programming, Process and Product Modelling and Decision Support, and Semantic Web are exploited and a methodology of User Driven Modelling and Programming (UDM/P) is developed, implemented, and tested as a means of demonstrating the efficacy of diagrammatic modelling.In greater detail, the research seeks to show that diagrammatic modelling eases problems of maintenance, extensibility, ease of use, and sharing of information. The methodology presented here to achieve this involves a three step translation from a visualised ontology, through a modelling tool, to output to interactive visualisations. An analysis of users groups them into categories of system creator, model builder, and model user. This categorisation corresponds well with the three-step translation process where users develop the ontology, modelling tool, and visualisations for their problem.This research establishes and exemplifies a novel paradigm of collaborative end-user programming by domain experts. The end-user programmers can use a visual interface where the visualisation of the software exactly matches the structure of the software itself, making translation between user and computer, and vice versa, much more direct and practical. The visualisation is based on an ontology that provides a representation of the software as a tree. The solution is based on translation from a source tree to a result tree, and visualisation of both. The result tree shows a structured representation of the model with a full visualisation of all parts that leads to the computed result.In conclusion, it is claimed that this direct representation of the structure enables an understanding of the program as an ontology and model that is then visualised, resulting in a more transparent shared understanding by all users. It is further argued that our diagrammatic modelling paradigm consequently eases problems of maintenance, extensibility, ease of use, and sharing of information. This method is applicable to any problem that lends itself to representation as a tree. This is considered a limitation of the method to be addressed in a future project