On Time Series Classification with Dictionary-Based Classifiers

A family of algorithms for time series classification (TSC) involve running a sliding window across each series, discretising the window to form a word, forming a histogram of word counts over the dictionary, then constructing a classifier on the histograms. A recent evaluation of two of this type of algorithm, Bag of Patterns (BOP) and Bag of Symbolic Fourier Approximation Symbols (BOSS) found a significant difference in accuracy between these seemingly similar algorithms. We investigate this phenomenon by deconstructing the classifiers and measuring the relative importance of the four key components between BOP and BOSS. We find that whilst ensembling is a key component for both algorithms, the effect of the other components is mixed and more complex. We conclude that BOSS represents the state of the art for dictionary-based TSC. Both BOP and BOSS can be classed as bag of words approaches. These are particularly popular in Computer Vision for tasks such as image classification. We adapt three techniques used in Computer Vision for TSC: Scale Invariant Feature Transform; Spatial Pyramids; and Histogram Intersection. We find that using Spatial Pyramids in conjunction with BOSS (SP) produces a significantly more accurate classifier. SP is significantly more accurate than standard benchmarks and the original BOSS algorithm. It is not significantly worse than the best shapelet-based or deep learning approaches, and is only outperformed by an ensemble that includes BOSS as a constituent module

Understanding and Comparing Deep Neural Networks for Age and Gender Classification

Recently, deep neural networks have demonstrated excellent performances in recognizing the age and gender on human face images. However, these models were applied in a black-box manner with no information provided about which facial features are actually used for prediction and how these features depend on image preprocessing, model initialization and architecture choice. We present a study investigating these different effects. In detail, our work compares four popular neural network architectures, studies the effect of pretraining, evaluates the robustness of the considered alignment preprocessings via cross-method test set swapping and intuitively visualizes the model's prediction strategies in given preprocessing conditions using the recent Layer-wise Relevance Propagation (LRP) algorithm. Our evaluations on the challenging Adience benchmark show that suitable parameter initialization leads to a holistic perception of the input, compensating artefactual data representations. With a combination of simple preprocessing steps, we reach state of the art performance in gender recognition.Comment: 8 pages, 5 figures, 5 tables. Presented at ICCV 2017 Workshop: 7th IEEE International Workshop on Analysis and Modeling of Faces and Gesture

Unmasking Clever Hans Predictors and Assessing What Machines Really Learn

Current learning machines have successfully solved hard application problems, reaching high accuracy and displaying seemingly "intelligent" behavior. Here we apply recent techniques for explaining decisions of state-of-the-art learning machines and analyze various tasks from computer vision and arcade games. This showcases a spectrum of problem-solving behaviors ranging from naive and short-sighted, to well-informed and strategic. We observe that standard performance evaluation metrics can be oblivious to distinguishing these diverse problem solving behaviors. Furthermore, we propose our semi-automated Spectral Relevance Analysis that provides a practically effective way of characterizing and validating the behavior of nonlinear learning machines. This helps to assess whether a learned model indeed delivers reliably for the problem that it was conceived for. Furthermore, our work intends to add a voice of caution to the ongoing excitement about machine intelligence and pledges to evaluate and judge some of these recent successes in a more nuanced manner.Comment: Accepted for publication in Nature Communication

Towards Interpretable Deep Learning Models for Knowledge Tracing

As an important technique for modeling the knowledge states of learners, the traditional knowledge tracing (KT) models have been widely used to support intelligent tutoring systems and MOOC platforms. Driven by the fast advancements of deep learning techniques, deep neural network has been recently adopted to design new KT models for achieving better prediction performance. However, the lack of interpretability of these models has painfully impeded their practical applications, as their outputs and working mechanisms suffer from the intransparent decision process and complex inner structures. We thus propose to adopt the post-hoc method to tackle the interpretability issue for deep learning based knowledge tracing (DLKT) models. Specifically, we focus on applying the layer-wise relevance propagation (LRP) method to interpret RNN-based DLKT model by backpropagating the relevance from the model's output layer to its input layer. The experiment results show the feasibility using the LRP method for interpreting the DLKT model's predictions, and partially validate the computed relevance scores from both question level and concept level. We believe it can be a solid step towards fully interpreting the DLKT models and promote their practical applications in the education domain

A workflow for the automatic segmentation of organelles in electron microscopy image stacks

pre-printElectron microscopy(EM) facilitates analysis of the form,distribution, and functional status of key organelle systems in various pathological processes,including those associated with neurodegenerative disease.Such EM data often provide important new in sights into the underlying disease mechanisms. The development of more accurate and efficient methods to quantify changes in subcellular microanatomy has already proven key to understanding the pathogenesis of Parkinson's and Alzheimer's diseases,as well as glaucoma. While our ability to acquire large volumes of 3D EM data is progressing rapidly, more advanced analysis tools are needed to assist in measuring precise three-dimensional morphologies of organelles within data sets that can include hundreds to thousands of whole cells. Although new imaging instrument throughputs can exceed teravoxels of data per day, image segmentation and analysis remain significant bottlenecks to achieving quantitative descriptions of whole cell structural organellomes. Here, we present a novel method for the automatic segmentation of organelles in 3D EM image stacks. Segmentations are generated using only 2D image information, making the method suitable for anisotropic imaging techniques such as serial block-face scanning electron microscopy (SBEM). Additionally, no assumptions about 3D organelle morphology are made, ensuring the method can be easily expanded to any number of structurally and functionally diverse organelles. Following the presentation of our algorithm, we validate its performance by assessing the segmentation accuracy of different organelle targets in an example SBEM dataset and demonstrate that it can be efficiently parallelized on supercomputing resources, resulting in a dramatic reduction in runtime