Implicit Decomposition for Write-Efficient Connectivity Algorithms

The future of main memory appears to lie in the direction of new technologies that provide strong capacity-to-performance ratios, but have write operations that are much more expensive than reads in terms of latency, bandwidth, and energy. Motivated by this trend, we propose sequential and parallel algorithms to solve graph connectivity problems using significantly fewer writes than conventional algorithms. Our primary algorithmic tool is the construction of an $o(n)$-sized "implicit decomposition" of a bounded-degree graph $G$ on $n$ nodes, which combined with read-only access to $G$ enables fast answers to connectivity and biconnectivity queries on $G$. The construction breaks the linear-write "barrier", resulting in costs that are asymptotically lower than conventional algorithms while adding only a modest cost to querying time. For general non-sparse graphs on $m$ edges, we also provide the first $o(m)$ writes and $O(m)$ operations parallel algorithms for connectivity and biconnectivity. These algorithms provide insight into how applications can efficiently process computations on large graphs in systems with read-write asymmetry

Structure of Business Firm Networks and Scale-Free Models

We study the structure of business firm networks and scale-free models with degree distribution $P(q) \propto (q+c)^{-\lambda}$ using the method of $k$-shell decomposition.We find that the Life Sciences industry network consist of three components: a ``nucleus,'' which is a small well connected subgraph, ``tendrils,'' which are small subgraphs consisting of small degree nodes connected exclusively to the nucleus, and a ``bulk body'' which consists of the majority of nodes. At the same time we do not observe the above structure in the Information and Communication Technology sector of industry. We also conduct a systematic study of these three components in random scale-free networks. Our results suggest that the sizes of the nucleus and the tendrils decrease as $\lambda$ increases and disappear for $\lambda \geq 3$. We compare the $k$-shell structure of random scale-free model networks with two real world business firm networks in the Life Sciences and in the Information and Communication Technology sectors. Our results suggest that the observed behavior of the $k$-shell structure in the two industries is consistent with a recently proposed growth model that assumes the coexistence of both preferential and random agreements in the evolution of industrial networks

Parallel implementation of the TRANSIMS micro-simulation

This paper describes the parallel implementation of the TRANSIMS traffic micro-simulation. The parallelization method is domain decomposition, which means that each CPU of the parallel computer is responsible for a different geographical area of the simulated region. We describe how information between domains is exchanged, and how the transportation network graph is partitioned. An adaptive scheme is used to optimize load balancing. We then demonstrate how computing speeds of our parallel micro-simulations can be systematically predicted once the scenario and the computer architecture are known. This makes it possible, for example, to decide if a certain study is feasible with a certain computing budget, and how to invest that budget. The main ingredients of the prediction are knowledge about the parallel implementation of the micro-simulation, knowledge about the characteristics of the partitioning of the transportation network graph, and knowledge about the interaction of these quantities with the computer system. In particular, we investigate the differences between switched and non-switched topologies, and the effects of 10 Mbit, 100 Mbit, and Gbit Ethernet. keywords: Traffic simulation, parallel computing, transportation planning, TRANSIM