Multiresolution analysis using wavelet, ridgelet, and curvelet transforms for medical image segmentation

Copyright @ 2011 Shadi AlZubi et al. This article has been made available through the Brunel Open Access Publishing Fund.The experimental study presented in this paper is aimed at the development of an automatic image segmentation system for classifying region of interest (ROI) in medical images which are obtained from different medical scanners such as PET, CT, or MRI. Multiresolution analysis (MRA) using wavelet, ridgelet, and curvelet transforms has been used in the proposed segmentation system. It is particularly a challenging task to classify cancers in human organs in scanners output using shape or gray-level information; organs shape changes throw different slices in medical stack and the gray-level intensity overlap in soft tissues. Curvelet transform is a new extension of wavelet and ridgelet transforms which aims to deal with interesting phenomena occurring along curves. Curvelet transforms has been tested on medical data sets, and results are compared with those obtained from the other transforms. Tests indicate that using curvelet significantly improves the classification of abnormal tissues in the scans and reduce the surrounding noise

Wavelet Integrated CNNs for Noise-Robust Image Classification

Convolutional Neural Networks (CNNs) are generally prone to noise interruptions, i.e., small image noise can cause drastic changes in the output. To suppress the noise effect to the final predication, we enhance CNNs by replacing max-pooling, strided-convolution, and average-pooling with Discrete Wavelet Transform (DWT). We present general DWT and Inverse DWT (IDWT) layers applicable to various wavelets like Haar, Daubechies, and Cohen, etc., and design wavelet integrated CNNs (WaveCNets) using these layers for image classification. In WaveCNets, feature maps are decomposed into the low-frequency and high-frequency components during the down-sampling. The low-frequency component stores main information including the basic object structures, which is transmitted into the subsequent layers to extract robust high-level features. The high-frequency components, containing most of the data noise, are dropped during inference to improve the noise-robustness of the WaveCNets. Our experimental results on ImageNet and ImageNet-C (the noisy version of ImageNet) show that WaveCNets, the wavelet integrated versions of VGG, ResNets, and DenseNet, achieve higher accuracy and better noise-robustness than their vanilla versions.Comment: CVPR accepted pape

ShearLab 3D: Faithful Digital Shearlet Transforms based on Compactly Supported Shearlets

Wavelets and their associated transforms are highly efficient when approximating and analyzing one-dimensional signals. However, multivariate signals such as images or videos typically exhibit curvilinear singularities, which wavelets are provably deficient of sparsely approximating and also of analyzing in the sense of, for instance, detecting their direction. Shearlets are a directional representation system extending the wavelet framework, which overcomes those deficiencies. Similar to wavelets, shearlets allow a faithful implementation and fast associated transforms. In this paper, we will introduce a comprehensive carefully documented software package coined ShearLab 3D (www.ShearLab.org) and discuss its algorithmic details. This package provides MATLAB code for a novel faithful algorithmic realization of the 2D and 3D shearlet transform (and their inverses) associated with compactly supported universal shearlet systems incorporating the option of using CUDA. We will present extensive numerical experiments in 2D and 3D concerning denoising, inpainting, and feature extraction, comparing the performance of ShearLab 3D with similar transform-based algorithms such as curvelets, contourlets, or surfacelets. In the spirit of reproducible reseaerch, all scripts are accessible on www.ShearLab.org.Comment: There is another shearlet software package (http://www.mathematik.uni-kl.de/imagepro/members/haeuser/ffst/) by S. H\"auser and G. Steidl. We will include this in a revisio

Simple Signal Extension Method for Discrete Wavelet Transform

Discrete wavelet transform of finite-length signals must necessarily handle the signal boundaries. The state-of-the-art approaches treat such boundaries in a complicated and inflexible way, using special prolog or epilog phases. This holds true in particular for images decomposed into a number of scales, exemplary in JPEG 2000 coding system. In this paper, the state-of-the-art approaches are extended to perform the treatment using a compact streaming core, possibly in multi-scale fashion. We present the core focused on CDF 5/3 wavelet and the symmetric border extension method, both employed in the JPEG 2000. As a result of our work, every input sample is visited only once, while the results are produced immediately, i.e. without buffering.Comment: preprint; presented on ICSIP 201

3D medical volume segmentation using hybrid multiresolution statistical approaches

This article is available through the Brunel Open Access Publishing Fund. Copyright © 2010 S AlZu’bi and A Amira.3D volume segmentation is the process of partitioning voxels into 3D regions (subvolumes) that represent meaningful physical entities which are more meaningful and easier to analyze and usable in future applications. Multiresolution Analysis (MRA) enables the preservation of an image according to certain levels of resolution or blurring. Because of multiresolution quality, wavelets have been deployed in image compression, denoising, and classification. This paper focuses on the implementation of efficient medical volume segmentation techniques. Multiresolution analysis including 3D wavelet and ridgelet has been used for feature extraction which can be modeled using Hidden Markov Models (HMMs) to segment the volume slices. A comparison study has been carried out to evaluate 2D and 3D techniques which reveals that 3D methodologies can accurately detect the Region Of Interest (ROI). Automatic segmentation has been achieved using HMMs where the ROI is detected accurately but suffers a long computation time for its calculations