Error Resilient Video Coding Using Bitstream Syntax And Iterative Microscopy Image Segmentation

There has been a dramatic increase in the amount of video traffic over the Internet in past several years. For applications like real-time video streaming and video conferencing, retransmission of lost packets is often not permitted. Popular video coding standards such as H.26x and VPx make use of spatial-temporal correlations for compression, typically making compressed bitstreams vulnerable to errors. We propose several adaptive spatial-temporal error concealment approaches for subsampling-based multiple description video coding. These adaptive methods are based on motion and mode information extracted from the H.26x video bitstreams. We also present an error resilience method using data duplication in VPx video bitstreams. A recent challenge in image processing is the analysis of biomedical images acquired using optical microscopy. Due to the size and complexity of the images, automated segmentation methods are required to obtain quantitative, objective and reproducible measurements of biological entities. In this thesis, we present two techniques for microscopy image analysis. Our first method, “Jelly Filling” is intended to provide 3D segmentation of biological images that contain incompleteness in dye labeling. Intuitively, this method is based on filling disjoint regions of an image with jelly-like fluids to iteratively refine segments that represent separable biological entities. Our second method selectively uses a shape-based function optimization approach and a 2D marked point process simulation, to quantify nuclei by their locations and sizes. Experimental results exhibit that our proposed methods are effective in addressing the aforementioned challenges

An Introduction to MPEG-G: The First Open ISO/IEC Standard for the Compression and Exchange of Genomic Sequencing Data

The development and progress of high-throughput sequencing technologies have transformed the sequencing of DNA from a scientific research challenge to practice. With the release of the latest generation of sequencing machines, the cost of sequencing a whole human genome has dropped to less than 600. Such achievements open the door to personalized medicine, where it is expected that genomic information of patients will be analyzed as a standard practice. However, the associated costs, related to storing, transmitting, and processing the large volumes of data, are already comparable to the costs of sequencing. To support the design of new and interoperable solutions for the representation, compression, and management of genomic sequencing data, the Moving Picture Experts Group (MPEG) jointly with working group 5 of ISO/TC276 'Biotechnology' has started to produce the ISO/IEC 23092 series, known as MPEG-G. MPEG-G does not only offer higher levels of compression compared with the state of the art but it also provides new functionalities, such as built-in support for random access in the compressed domain, support for data protection mechanisms, flexible storage, and streaming capabilities. MPEG-G only specifies the decoding syntax of compressed bitstreams, as well as a file format and a transport format. This allows for the development of new encoding solutions with higher degrees of optimization while maintaining compatibility with any existing MPEG-G decoder

Dynamically Reconfigurable Architectures and Systems for Time-varying Image Constraints (DRASTIC) for Image and Video Compression

In the current information booming era, image and video consumption is ubiquitous. The associated image and video coding operations require significant computing resources for both small-scale computing systems as well as over larger network systems. For different scenarios, power, bitrate and image quality can impose significant time-varying constraints. For example, mobile devices (e.g., phones, tablets, laptops, UAVs) come with significant constraints on energy and power. Similarly, computer networks provide time-varying bandwidth that can depend on signal strength (e.g., wireless networks) or network traffic conditions. Alternatively, the users can impose different constraints on image quality based on their interests. Traditional image and video coding systems have focused on rate-distortion optimization. More recently, distortion measures (e.g., PSNR) are being replaced by more sophisticated image quality metrics. However, these systems are based on fixed hardware configurations that provide limited options over power consumption. The use of dynamic partial reconfiguration with Field Programmable Gate Arrays (FPGAs) provides an opportunity to effectively control dynamic power consumption by jointly considering software-hardware configurations. This dissertation extends traditional rate-distortion optimization to rate-quality-power/energy optimization and demonstrates a wide variety of applications in both image and video compression. In each application, a family of Pareto-optimal configurations are developed that allow fine control in the rate-quality-power/energy optimization space. The term Dynamically Reconfiguration Architecture Systems for Time-varying Image Constraints (DRASTIC) is used to describe the derived systems. DRASTIC covers both software-only as well as software-hardware configurations to achieve fine optimization over a set of general modes that include: (i) maximum image quality, (ii) minimum dynamic power/energy, (iii) minimum bitrate, and (iv) typical mode over a set of opposing constraints to guarantee satisfactory performance. In joint software-hardware configurations, DRASTIC provides an effective approach for dynamic power optimization. For software configurations, DRASTIC provides an effective method for energy consumption optimization by controlling processing times. The dissertation provides several applications. First, stochastic methods are given for computing quantization tables that are optimal in the rate-quality space and demonstrated on standard JPEG compression. Second, a DRASTIC implementation of the DCT is used to demonstrate the effectiveness of the approach on motion JPEG. Third, a reconfigurable deblocking filter system is investigated for use in the current H.264/AVC systems. Fourth, the dissertation develops DRASTIC for all 35 intra-prediction modes as well as intra-encoding for the emerging High Efficiency Video Coding standard (HEVC)

Implementation of a motion estimation algorithm for Intel FPGAs using OpenCL

Producción CientíficaMotion Estimation is one of the main tasks behind any video encoder. It is a compu- tationally costly task; therefore, it is usually delegated to specific or reconfigurable hardware, such as FPGAs. Over the years, multiple FPGA implementations have been developed, mainly using hardware description languages such as Verilog or VHDL. Since programming using hardware description languages is a complex task, it is desirable to use higher-level languages to develop FPGA applications.The aim of this work is to evaluate OpenCL, in terms of expressiveness, as a tool for devel- oping this kind of FPGA applications. To do so, we present and evaluate a parallel implementation of the Block Matching Motion Estimation process using OpenCL for Intel FPGAs, usable and tested on an Intel Stratix 10 FPGA. The implementa- tion efficiently processes Full HD frames completely inside the FPGA. In this work, we show the resource utilization when synthesizing the code on an Intel Stratix 10 FPGA, as well as a performance comparison with multiple CPU implementations with varying levels of optimization and vectorization capabilities. We also compare the proposed OpenCL implementation, in terms of resource utilization and perfor- mance, with estimations obtained from an equivalent VHDL implementation.Junta de Castilla y León - Consejería de Educación de la Proyecto PROPHET-2 (VA226P20)Ministerio de Economía, Industria y Competitividad: (PID2019- 104834 GB-I00) and European Regional Development Fund (ERDF) program: Project PCAS (TIN2017-88614-R)Ministerio de Ciencia e Innovación (PID2019-104184RB-I00 / AEI / 10.13039/501100011033)Xunta de Galicia y fondos FEDER de la UE (Centro de Investigación de Galicia acreditación 2019-2022, ref. ED431G 2019/01; Consolidation Program of Competitive Reference Groups, ref. ED431C 2021/30Ministerio de Ciencia e Innovación, Agencia Estatal de Investigación y “European Union NextGenerationEU/PRTR” : (MCIN/ AEI/10.13039/501100011033) - grant TED2021-130367B-I00Publicación en abierto financiada por el Consorcio de Bibliotecas Universitarias de Castilla y León (BUCLE), con cargo al Programa Operativo 2014ES16RFOP009 FEDER 2014-2020 DE CASTILLA Y LEÓN, Actuación:20007-CL - Apoyo Consorcio BUCL

Análise do HEVC escalável : desempenho e controlo de débito

Mestrado em Engenharia Eletrónica e TelecomunicaçõesEsta dissertação apresenta um estudo da norma de codificação de vídeo de alta eficiência (HEVC) e a sua extensão para vídeo escalável, SHVC. A norma de vídeo SHVC proporciona um melhor desempenho quando codifica várias camadas em simultâneo do que quando se usa o codificador HEVC numa configuração simulcast. Ambos os codificadores de referência, tanto para a camada base como para a camada superior usam o mesmo modelo de controlo de débito, modelo R-λ, que foi otimizado para o HEVC. Nenhuma otimização de alocação de débito entre camadas foi até ao momento proposto para o modelo de testes (SHM 8) para a escalabilidade do HEVC (SHVC). Derivamos um novo modelo R-λ apropriado para a camada superior e para o caso de escalabilidade espacial, que conduziu a um ganho de BD-débito de 1,81% e de BD-PSNR de 0,025 em relação ao modelo de débito-distorção existente no SHM do SHVC. Todavia, mostrou-se também nesta dissertação que o proposto modelo de R-λ não deve ser usado na camada inferior (camada base) no SHVC e por conseguinte no HEVC.This dissertation provides a study of the High Efficiency Video Coding standard (HEVC) and its scalable extension, SHVC. The SHVC provides a better performance when encoding several layers simultaneously than using an HEVC encoder in a simulcast configuration. Both reference encoders, in the base layer and in the enhancement layer use the same rate control model, R-λ model, which was optimized for HEVC. No optimal bitrate partitioning amongst layers is proposed in scalable HEVC (SHVC) test model (SHM 8). We derived a new R-λ model for the enhancement layer and for the spatial case which led to a DB-rate gain of 1.81% and DB-PSNR gain of 0.025 in relation to the rate-distortion model of SHM-SHVC. Nevertheless, we also show in this dissertation that the proposed model of R-λ should not be used neither in the base layer nor in HEVC

Efficient algorithms for scalable video coding

A scalable video bitstream specifically designed for the needs of various client terminals, network conditions, and user demands is much desired in current and future video transmission and storage systems. The scalable extension of the H.264/AVC standard (SVC) has been developed to satisfy the new challenges posed by heterogeneous environments, as it permits a single video stream to be decoded fully or partially with variable quality, resolution, and frame rate in order to adapt to a specific application. This thesis presents novel improved algorithms for SVC, including: 1) a fast inter-frame and inter-layer coding mode selection algorithm based on motion activity; 2) a hierarchical fast mode selection algorithm; 3) a two-part Rate Distortion (RD) model targeting the properties of different prediction modes for the SVC rate control scheme; and 4) an optimised Mean Absolute Difference (MAD) prediction model. The proposed fast inter-frame and inter-layer mode selection algorithm is based on the empirical observation that a macroblock (MB) with slow movement is more likely to be best matched by one in the same resolution layer. However, for a macroblock with fast movement, motion estimation between layers is required. Simulation results show that the algorithm can reduce the encoding time by up to 40%, with negligible degradation in RD performance. The proposed hierarchical fast mode selection scheme comprises four levels and makes full use of inter-layer, temporal and spatial correlation aswell as the texture information of each macroblock. Overall, the new technique demonstrates the same coding performance in terms of picture quality and compression ratio as that of the SVC standard, yet produces a saving in encoding time of up to 84%. Compared with state-of-the-art SVC fast mode selection algorithms, the proposed algorithm achieves a superior computational time reduction under very similar RD performance conditions. The existing SVC rate distortion model cannot accurately represent the RD properties of the prediction modes, because it is influenced by the use of inter-layer prediction. A separate RD model for inter-layer prediction coding in the enhancement layer(s) is therefore introduced. Overall, the proposed algorithms improve the average PSNR by up to 0.34dB or produce an average saving in bit rate of up to 7.78%. Furthermore, the control accuracy is maintained to within 0.07% on average. As aMADprediction error always exists and cannot be avoided, an optimisedMADprediction model for the spatial enhancement layers is proposed that considers the MAD from previous temporal frames and previous spatial frames together, to achieve a more accurateMADprediction. Simulation results indicate that the proposedMADprediction model reduces the MAD prediction error by up to 79% compared with the JVT-W043 implementation

Attention Driven Solutions for Robust Digital Watermarking Within Media

As digital technologies have dramatically expanded within the last decade, content recognition now plays a major role within the control of media. Of the current recent systems available, digital watermarking provides a robust maintainable solution to enhance media security. The two main properties of digital watermarking, imperceptibility and robustness, are complimentary to each other but by employing visual attention based mechanisms within the watermarking framework, highly robust watermarking solutions are obtainable while also maintaining high media quality. This thesis firstly provides suitable bottom-up saliency models for raw image and video. The image and video saliency algorithms are estimated directly from within the wavelet domain for enhanced compatibility with the watermarking framework. By combining colour, orientation and intensity contrasts for the image model and globally compensated object motion in the video model, novel wavelet-based visual saliency algorithms are provided. The work extends these saliency models into a unique visual attention-based watermarking scheme by increasing the watermark weighting parameter within visually uninteresting regions. An increased watermark robustness, up to 40%, against various filtering attacks, JPEG2000 and H.264/AVC compression is obtained while maintaining the media quality, verified by various objective and subjective evaluation tools. As most video sequences are stored in an encoded format, this thesis studies watermarking schemes within the compressed domain. Firstly, the work provides a compressed domain saliency model formulated directly within the HEVC codec, utilizing various coding decisions such as block partition size, residual magnitude, intra frame angular prediction mode and motion vector difference magnitude. Large computational savings, of 50% or greater, are obtained compared with existing methodologies, as the saliency maps are generated from partially decoded bitstreams. Finally, the saliency maps formulated within the compressed HEVC domain are studied within the watermarking framework. A joint encoder and a frame domain watermarking scheme are both proposed by embedding data into the quantised transform residual data or wavelet coefficients, respectively, which exhibit low visual salience

Compression and visual quality assessment for light field contents

Since its invention in the 19th century, photography has allowed to create durable images of the world around us by capturing the intensity of light that flows through a scene, first analogically by using light-sensitive material, and then, with the advent of electronic image sensors, digitally. However, one main limitation of both analog and digital photography lays in its inability to capture any information about the direction of light rays. Through traditional photography, each three-dimensional scene is projected onto a 2D plane; consequently, no information about the position of the 3D objects in space is retained. Light field photography aims at overcoming these limitations by recording the direction of light along with its intensity. In the past, several acquisition technologies have been presented to properly capture light field information, and portable devices have been commercialized to the general public. However, a considerably larger volume of data is generated when compared to traditional photography. Thus, new solutions must be designed to face the challenges light field photography poses in terms of storage, representation, and visualization of the acquired data. In particular, new and efficient compression algorithms are needed to sensibly reduce the amount of data that needs to be stored and transmitted, while maintaining an adequate level of perceptual quality. In designing new solutions to address the unique challenges posed by light field photography, one cannot forgo the importance of having reliable, reproducible means of evaluating their performance, especially in relation to the scenario in which they will be consumed. To that end, subjective assessment of visual quality is of paramount importance to evaluate the impact of compression, representation, and rendering models on user experience. Yet, the standardized methodologies that are commonly used to evaluate the visual quality of traditional media content, such as images and videos, are not equipped to tackle the challenges posed by light field photography. New subjective methodologies must be tailored for the new possibilities this new type of imaging offers in terms of rendering and visual experience. In this work, we address the aforementioned problems by both designing new methodologies for visual quality evaluation of light field contents, and outlining a new compression solution to efficiently reduce the amount of data that needs to be transmitted and stored. We first analyse how traditional methodologies for subjective evaluation of multimedia contents can be adapted to suit light field data, and, we propose new methodologies to reliably assess the visual quality while maintaining user engagement. Furthermore, we study how user behavior is affected by the visual quality of the data. We employ subjective quality assessment to compare several state-of-the-art solutions in light field coding, in order to find the most promising approaches to minimize the volume of data without compromising on the perceptual quality. To that means, we define and inspect several coding approaches for light field compression, and we investigate the impact of color subsampling on the final rendered content. Lastly, we propose a new coding approach to perform light field compression, showing significant improvement with respect to the state of the art