Energy-based Analysis of Biochemical Cycles using Bond Graphs

Thermodynamic aspects of chemical reactions have a long history in the Physical Chemistry literature. In particular, biochemical cycles - the building-blocks of biochemical systems - require a source of energy to function. However, although fundamental, the role of chemical potential and Gibb's free energy in the analysis of biochemical systems is often overlooked leading to models which are physically impossible. The bond graph approach was developed for modelling engineering systems where energy generation, storage and transmission are fundamental. The method focuses on how power flows between components and how energy is stored, transmitted or dissipated within components. Based on early ideas of network thermodynamics, we have applied this approach to biochemical systems to generate models which automatically obey the laws of thermodynamics. We illustrate the method with examples of biochemical cycles. We have found that thermodynamically compliant models of simple biochemical cycles can easily be developed using this approach. In particular, both stoichiometric information and simulation models can be developed directly from the bond graph. Furthermore, model reduction and approximation while retaining structural and thermodynamic properties is facilitated. Because the bond graph approach is also modular and scaleable, we believe that it provides a secure foundation for building thermodynamically compliant models of large biochemical networks

Modelling & analysis of hybrid dynamic systems using a bond graph approach

Hybrid models are those containing continuous and discontinuous behaviour. In constructing dynamic systems models, it is frequently desirable to abstract rapidly changing, highly nonlinear behaviour to a discontinuity. Bond graphs lend themselves to systems modelling by being multi-disciplinary and reflecting the physics of the system. One advantage is that they can produce a mathematical model in a form that simulates quickly and efficiently. Hybrid bond graphs are a logical development which could further improve speed and efficiency. A range of hybrid bond graph forms have been proposed which are suitable for either simulation or further analysis, but not both. None have reached common usage. A Hybrid bond graph method is proposed here which is suitable for simulation as well as providing engineering insight through analysis. This new method features a distinction between structural and parametric switching. The controlled junction is used for the former, and gives rise to dynamic causality. A controlled element is developed for the latter. Dynamic causality is unconstrained so as to aid insight, and a new notation is proposed. The junction structure matrix for the hybrid bond graph features Boolean terms to reflect the controlled junctions in the graph structure. This hybrid JSM is used to generate a mixed-Boolean state equation. When storage elements are in dynamic causality, the resulting system equation is implicit. The focus of this thesis is the exploitation of the model. The implicit form enables application of matrix-rank criteria from control theory, and control properties can be seen in the structure and causal assignment. An impulsive mode may occur when storage elements are in dynamic causality, but otherwise there are no energy losses associated with commutation because this method dictates the way discontinuities are abstracted. The main contribution is therefore a Hybrid Bond Graph which reflects the physics of commutating systems and offers engineering insight through the choice of controlled elements and dynamic causality. It generates a unique, implicit, mixed-Boolean system equation, describing all modes of operation. This form is suitable for both simulation and analysis

Predictive pole-placement control with linear models

The predictive pole-placement control method introduced in this paper embeds the classical pole-placement state feedback design into a quadratic optimisation-based model-predictive formulation. This provides an alternative to model-predictive controllers which are based on linear–quadratic control. The theoretical properties of the controller in a linear continuous-time setting are presented and a number of illustrative examples are given. These results provide the foundation for novel linear and nonlinear constrained predictive control methods based on continuous-time models

Modeling Analysis and Simulation of Wheel Suspension System's Response for Quarter Car Model by Using 20-sim Software for Honda Civic Lx 2019 Sedan

This paper exhibits a study of car passive and active- suspension system to improving drive exhilarate to passengers while also enhancing vehicle stability by decreasing the effect of oscillation on the suspension. Modeling and simulation by using the bond diagram. They much concede a prime arrangement of the machine to the exterior surrounding: street quality, atmospherically circumstances, while guarantying driver as well as passengers, major safeness and more potentially exhilarate. Automotive aid it course manners. The result cleared this action plan at different set during the vehicle mean, but particularly in evolution level. It is also clear the proportion of suspension system's mass to the vehicle's mass. Also graphical representation of suspension system' parameters like vertical passenger displacement, potential energy of mass of suspension system and acceleration. To foretell the comportment of a car, it is necessary to make design, modeling, and simulation. Honda Civic Lx 2019 sedan car has used for modeling, and simulation

Analysis of a Hydroelectric Plant connected to Electrical Power System in the Physical Domain

A bond graph model of a hydroelectric plant is proposed. In order to analyze the system some structural properties of a bond graph are used. The structural controllability of the hydroelctric plant is described. Also, the steady state of the state variables applying the bond graph in a derivative causality assignment is obtained. Finally, simulation results of the system are shown