3,491 research outputs found
The relation between color spaces and compositional data analysis demonstrated with magnetic resonance image processing applications
This paper presents a novel application of compositional data analysis
methods in the context of color image processing. A vector decomposition method
is proposed to reveal compositional components of any vector with positive
components followed by compositional data analysis to demonstrate the relation
between color space concepts such as hue and saturation to their compositional
counterparts. The proposed methods are applied to a magnetic resonance imaging
dataset acquired from a living human brain and a digital color photograph to
perform image fusion. Potential future applications in magnetic resonance
imaging are mentioned and the benefits/disadvantages of the proposed methods
are discussed in terms of color image processing.Comment: 13 pages, 3 figures, short paper, submitted to Austrian Journal of
Statistics compositional data analysis special issue, first revision, fix
rendering error in fig
Grey-matter texture abnormalities and reduced hippocampal volume are distinguishing features of schizophrenia
Neurodevelopmental processes are widely believed to underlie schizophrenia. Analysis of
brain texture from conventional magnetic resonance imaging (MRI) can detect disturbance in
brain cytoarchitecture. We tested the hypothesis that patients with schizophrenia manifest
quantitative differences in brain texture that, alongside discrete volumetric changes, may
serve as an endophenotypic biomarker. Texture analysis (TA) of grey matter distribution and
voxel-based morphometry (VBM) of regional brain volumes were applied to MRI scans of 27
patients with schizophrenia and 24 controls. Texture parameters (uniformity and entropy)
were also used as covariates in VBM analyses to test for correspondence with regional brain
volume. Linear discriminant analysis tested if texture and volumetric data predicted
diagnostic group membership (schizophrenia or control). We found that uniformity and
entropy of grey matter differed significantly between individuals with schizophrenia and
controls at the fine spatial scale (filter width below 2 mm). Within the schizophrenia group,
these texture parameters correlated with volumes of the left hippocampus, right amygdala
and cerebellum. The best predictor of diagnostic group membership was the combination of
fine texture heterogeneity and left hippocampal size. This study highlights the presence of
distributed grey-matter abnormalities in schizophrenia, and their relation to focal structural
abnormality of the hippocampus. The conjunction of these features has potential as a
neuroimaging endophenotype of schizophrenia
From 3D Point Clouds to Pose-Normalised Depth Maps
We consider the problem of generating either pairwise-aligned or pose-normalised depth maps from noisy 3D point clouds in a relatively unrestricted poses. Our system is deployed in a 3D face alignment application and consists of the following four stages: (i) data filtering, (ii) nose tip identification and sub-vertex localisation, (iii) computation of the (relative) face orientation, (iv) generation of either a pose aligned or a pose normalised depth map. We generate an implicit radial basis function (RBF) model of the facial surface and this is employed within all four stages of the process. For example, in stage (ii), construction of novel invariant features is based on sampling this RBF over a set of concentric spheres to give a spherically-sampled RBF (SSR) shape histogram. In stage (iii), a second novel descriptor, called an isoradius contour curvature signal, is defined, which allows rotational alignment to be determined using a simple process of 1D correlation. We test our system on both the University of York (UoY) 3D face dataset and the Face Recognition Grand Challenge (FRGC) 3D data. For the more challenging UoY data, our SSR descriptors significantly outperform three variants of spin images, successfully identifying nose vertices at a rate of 99.6%. Nose localisation performance on the higher quality FRGC data, which has only small pose variations, is 99.9%. Our best system successfully normalises the pose of 3D faces at rates of 99.1% (UoY data) and 99.6% (FRGC data)
Action Recognition in Videos: from Motion Capture Labs to the Web
This paper presents a survey of human action recognition approaches based on
visual data recorded from a single video camera. We propose an organizing
framework which puts in evidence the evolution of the area, with techniques
moving from heavily constrained motion capture scenarios towards more
challenging, realistic, "in the wild" videos. The proposed organization is
based on the representation used as input for the recognition task, emphasizing
the hypothesis assumed and thus, the constraints imposed on the type of video
that each technique is able to address. Expliciting the hypothesis and
constraints makes the framework particularly useful to select a method, given
an application. Another advantage of the proposed organization is that it
allows categorizing newest approaches seamlessly with traditional ones, while
providing an insightful perspective of the evolution of the action recognition
task up to now. That perspective is the basis for the discussion in the end of
the paper, where we also present the main open issues in the area.Comment: Preprint submitted to CVIU, survey paper, 46 pages, 2 figures, 4
table
Content-based image retrieval for brain MRI: An image-searching engine and population-based analysis to utilize past clinical data for future diagnosis
AbstractRadiological diagnosis is based on subjective judgment by radiologists. The reasoning behind this process is difficult to document and share, which is a major obstacle in adopting evidence-based medicine in radiology. We report our attempt to use a comprehensive brain parcellation tool to systematically capture image features and use them to record, search, and evaluate anatomical phenotypes. Anatomical images (T1-weighted MRI) were converted to a standardized index by using a high-dimensional image transformation method followed by atlas-based parcellation of the entire brain. We investigated how the indexed anatomical data captured the anatomical features of healthy controls and a population with Primary Progressive Aphasia (PPA). PPA was chosen because patients have apparent atrophy at different degrees and locations, thus the automated quantitative results can be compared with trained clinicians' qualitative evaluations. We explored and tested the power of individual classifications and of performing a search for images with similar anatomical features in a database using partial least squares-discriminant analysis (PLS-DA) and principal component analysis (PCA). The agreement between the automated z-score and the averaged visual scores for atrophy (r = 0.8) was virtually the same as the inter-evaluator agreement. The PCA plot distribution correlated with the anatomical phenotypes and the PLS-DA resulted in a model with an accuracy of 88% for distinguishing PPA variants. The quantitative indices captured the main anatomical features. The indexing of image data has a potential to be an effective, comprehensive, and easily translatable tool for clinical practice, providing new opportunities to mine clinical databases for medical decision support
An overview of view-based 2D-3D indexing methods
International audienceThis paper proposes a comprehensive overview of state of the art 2D/3D, view-based indexing methods. The principle of 2D/3D indexing methods consists of describing 3D models by means of a set of 2D shape descriptors, associated with a set of corresponding 2D views (under the assumption of a given projection model). Notably, such an approach makes it possible to identify 3D objects of interest from 2D images/videos. An experimental evaluation is also proposed, in order to examine the influence of the number of views and of the associated viewing angle selection strategies on the retrieval results. Experiments concern both 3D model retrieval and image recognition from a single view. Results obtained show promising performances, with recognition rates from a single view higher then 66%, which opens interesting perspectives in terms of semantic metadata extraction from still images/videos
Crenulation Cleavage Development and the Influence of Rock Microstructure on Crustal Seismic Anisotropy
This thesis investigates the cause of mass transfer during crenulation cleavage formation and the role that elastically anisotropic minerals and fabric development play in promoting seismic anisotropy in the crust. Crenulation cleavage is the most common fabric in multiplydeformed, phyllosilicate-rich metamorphic rocks. During its formation the originally planar fabric gets crenulated, eventually leading to the differentiation of quartz- and feldspar-rich regions (QFdomains) in the crenulation hinges, and phyllosilicate-rich regions (P-domains) in the crenulation limbs. This differentiation is driven by the dissolution of quartz and feldspar in the P-domains, and the precipitation of those minerals in the QF-domains. Finite element models are created to investigate how the elastic interactions of quartz and muscovite minerals affect the grain-scale stress and strain distributions at different stages of crenulation cleavage development. Gradients in mean stress and volumetric strain develop between the limbs and hinges of the microfolds during fabric formation and are sufficient to drive mass transfer between the two domains. v To study the influence of different microstructural variables on seismic wave speed anisotropy, simplified muscovite-quartz models are created with varying amounts of muscovite, varying quartz and muscovite orientations, and varying spatial distributions. The asymptotic expansion homogenization method coupled with finite element modeling (AEH-FE) is used to calculate bulk stiffness tensors and seismic wave speeds. Muscovite’s abundance and preferred orientation have significant influence of seismic wave speed anisotropy due to the extreme anisotropic elasticity of the mineral. The same method is employed to study the seismic behavior of rocks containing different stages of crenulation cleavage. Mineral orientation maps of rock samples were created, using electron backscatter diffraction, and used as input files for the AEH-FE program. Schists with a planar foliation are highly elastically anisotropic, but a rock with a well developed crenulation cleavage is much less anisotropic. These results imply that regions with larger scale crustal structures, such as folds and shear-zones, can be much more muted in their seismic signal than the schistose samples that make up those structures
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