A semantic and agent-based approach to support information retrieval, interoperability and multi-lateral viewpoints for heterogeneous environmental databases

PhDData stored in individual autonomous databases often needs to be combined and interrelated. For example, in the Inland Water (IW) environment monitoring domain, the spatial and temporal variation of measurements of different water quality indicators stored in different databases are of interest. Data from multiple data sources is more complex to combine when there is a lack of metadata in a computation forin and when the syntax and semantics of the stored data models are heterogeneous. The main types of information retrieval (IR) requirements are query transparency and data harmonisation for data interoperability and support for multiple user views. A combined Semantic Web based and Agent based distributed system framework has been developed to support the above IR requirements. It has been implemented using the Jena ontology and JADE agent toolkits. The semantic part supports the interoperability of autonomous data sources by merging their intensional data, using a Global-As-View or GAV approach, into a global semantic model, represented in DAML+OIL and in OWL. This is used to mediate between different local database views. The agent part provides the semantic services to import, align and parse semantic metadata instances, to support data mediation and to reason about data mappings during alignment. The framework has applied to support information retrieval, interoperability and multi-lateral viewpoints for four European environmental agency databases. An extended GAV approach has been developed and applied to handle queries that can be reformulated over multiple user views of the stored data. This allows users to retrieve data in a conceptualisation that is better suited to them rather than to have to understand the entire detailed global view conceptualisation. User viewpoints are derived from the global ontology or existing viewpoints of it. This has the advantage that it reduces the number of potential conceptualisations and their associated mappings to be more computationally manageable. Whereas an ad hoc framework based upon conventional distributed programming language and a rule framework could be used to support user views and adaptation to user views, a more formal framework has the benefit in that it can support reasoning about the consistency, equivalence, containment and conflict resolution when traversing data models. A preliminary formulation of the formal model has been undertaken and is based upon extending a Datalog type algebra with hierarchical, attribute and instance value operators. These operators can be applied to support compositional mapping and consistency checking of data views. The multiple viewpoint system was implemented as a Java-based application consisting of two sub-systems, one for viewpoint adaptation and management, the other for query processing and query result adjustment

: Méthodes d'Inférence Symbolique pour les Bases de Données

This dissertation is a summary of a line of research, that I wasactively involved in, on learning in databases from examples. Thisresearch focused on traditional as well as novel database models andlanguages for querying, transforming, and describing the schema of adatabase. In case of schemas our contributions involve proposing anoriginal languages for the emerging data models of Unordered XML andRDF. We have studied learning from examples of schemas for UnorderedXML, schemas for RDF, twig queries for XML, join queries forrelational databases, and XML transformations defined with a novelmodel of tree-to-word transducers.Investigating learnability of the proposed languages required us toexamine closely a number of their fundamental properties, often ofindependent interest, including normal forms, minimization,containment and equivalence, consistency of a set of examples, andfinite characterizability. Good understanding of these propertiesallowed us to devise learning algorithms that explore a possibly largesearch space with the help of a diligently designed set ofgeneralization operations in search of an appropriate solution.Learning (or inference) is a problem that has two parameters: theprecise class of languages we wish to infer and the type of input thatthe user can provide. We focused on the setting where the user inputconsists of positive examples i.e., elements that belong to the goallanguage, and negative examples i.e., elements that do not belong tothe goal language. In general using both negative and positiveexamples allows to learn richer classes of goal languages than usingpositive examples alone. However, using negative examples is oftendifficult because together with positive examples they may cause thesearch space to take a very complex shape and its exploration may turnout to be computationally challenging.Ce mémoire est une courte présentation d’une direction de recherche, à laquelle j’ai activementparticipé, sur l’apprentissage pour les bases de données à partir d’exemples. Cette recherches’est concentrée sur les modèles et les langages, aussi bien traditionnels qu’émergents, pourl’interrogation, la transformation et la description du schéma d’une base de données. Concernantles schémas, nos contributions consistent en plusieurs langages de schémas pour les nouveaumodèles de bases de données que sont XML non-ordonné et RDF. Nous avons ainsi étudiél’apprentissage à partir d’exemples des schémas pour XML non-ordonné, des schémas pour RDF,des requêtes twig pour XML, les requêtes de jointure pour bases de données relationnelles et lestransformations XML définies par un nouveau modèle de transducteurs arbre-à-mot.Pour explorer si les langages proposés peuvent être appris, nous avons été obligés d’examinerde près un certain nombre de leurs propriétés fondamentales, souvent souvent intéressantespar elles-mêmes, y compris les formes normales, la minimisation, l’inclusion et l’équivalence, lacohérence d’un ensemble d’exemples et la caractérisation finie. Une bonne compréhension de cespropriétés nous a permis de concevoir des algorithmes d’apprentissage qui explorent un espace derecherche potentiellement très vaste grâce à un ensemble d’opérations de généralisation adapté àla recherche d’une solution appropriée.L’apprentissage (ou l’inférence) est un problème à deux paramètres : la classe précise delangage que nous souhaitons inférer et le type d’informations que l’utilisateur peut fournir. Nousnous sommes placés dans le cas où l’utilisateur fournit des exemples positifs, c’est-à-dire deséléments qui appartiennent au langage cible, ainsi que des exemples négatifs, c’est-à-dire qui n’enfont pas partie. En général l’utilisation à la fois d’exemples positifs et négatifs permet d’apprendredes classes de langages plus riches que l’utilisation uniquement d’exemples positifs. Toutefois,l’utilisation des exemples négatifs est souvent difficile parce que les exemples positifs et négatifspeuvent rendre la forme de l’espace de recherche très complexe, et par conséquent, son explorationinfaisable

The Vadalog System: Datalog-based Reasoning for Knowledge Graphs

Over the past years, there has been a resurgence of Datalog-based systems in the database community as well as in industry. In this context, it has been recognized that to handle the complex knowl\-edge-based scenarios encountered today, such as reasoning over large knowledge graphs, Datalog has to be extended with features such as existential quantification. Yet, Datalog-based reasoning in the presence of existential quantification is in general undecidable. Many efforts have been made to define decidable fragments. Warded Datalog+/- is a very promising one, as it captures PTIME complexity while allowing ontological reasoning. Yet so far, no implementation of Warded Datalog+/- was available. In this paper we present the Vadalog system, a Datalog-based system for performing complex logic reasoning tasks, such as those required in advanced knowledge graphs. The Vadalog system is Oxford's contribution to the VADA research programme, a joint effort of the universities of Oxford, Manchester and Edinburgh and around 20 industrial partners. As the main contribution of this paper, we illustrate the first implementation of Warded Datalog+/-, a high-performance Datalog+/- system utilizing an aggressive termination control strategy. We also provide a comprehensive experimental evaluation.Comment: Extended version of VLDB paper <https://doi.org/10.14778/3213880.3213888

Structural Graph-based Metamodel Matching

Data integration has been, and still is, a challenge for applications processing multiple heterogeneous data sources. Across the domains of schemas, ontologies, and metamodels, this imposes the need for mapping specifications, i.e. the task of discovering semantic correspondences between elements. Support for the development of such mappings has been researched, producing matching systems that automatically propose mapping suggestions. However, especially in the context of metamodel matching the result quality of state of the art matching techniques leaves room for improvement. Although the traditional approach of pair-wise element comparison works on smaller data sets, its quadratic complexity leads to poor runtime and memory performance and eventually to the inability to match, when applied on real-world data. The work presented in this thesis seeks to address these shortcomings. Thereby, we take advantage of the graph structure of metamodels. Consequently, we derive a planar graph edit distance as metamodel similarity metric and mining-based matching to make use of redundant information. We also propose a planar graph-based partitioning to cope with large-scale matching. These techniques are then evaluated using real-world mappings from SAP business integration scenarios and the MDA community. The results demonstrate improvement in quality and managed runtime and memory consumption for large-scale metamodel matching