Semantics of Separation-Logic Typing and Higher-order Frame Rules for<br> Algol-like Languages

We show how to give a coherent semantics to programs that are well-specified in a version of separation logic for a language with higher types: idealized algol extended with heaps (but with immutable stack variables). In particular, we provide simple sound rules for deriving higher-order frame rules, allowing for local reasoning

Formal Compiler Implementation in a Logical Framework

The task of designing and implementing a compiler can be a difficult and error-prone process. In this paper, we present a new approach based on the use of higher-order abstract syntax and term rewriting in a logical framework. All program transformations, from parsing to code generation, are cleanly isolated and specified as term rewrites. This has several advantages. The correctness of the compiler depends solely on a small set of rewrite rules that are written in the language of formal mathematics. In addition, the logical framework guarantees the preservation of scoping, and it automates many frequently-occurring tasks including substitution and rewriting strategies. As we show, compiler development in a logical framework can be easier than in a general-purpose language like ML, in part because of automation, and also because the framework provides extensive support for examination, validation, and debugging of the compiler transformations. The paper is organized around a case study, using the MetaPRL logical framework to compile an ML-like language to Intel x86 assembly. We also present a scoped formalization of x86 assembly in which all registers are immutable

Functional Big-step Semantics

When doing an interactive proof about a piece of software, it is important that the underlying programming language’s semantics does not make the proof unnecessarily difficult or unwieldy. Both smallstep and big-step semantics are commonly used, and the latter is typically given by an inductively defined relation. In this paper, we consider an alternative: using a recursive function akin to an interpreter for the language. The advantages include a better induction theorem, less duplication, accessibility to ordinary functional programmers, and the ease of doing symbolic simulation in proofs via rewriting. We believe that this style of semantics is well suited for compiler verification, including proofs of divergence preservation. We do not claim the invention of this style of semantics: our contribution here is to clarify its value, and to explain how it supports several language features that might appear to require a relational or small-step approach. We illustrate the technique on a simple imperative language with C-like for-loops and a break statement, and compare it to a variety of other approaches. We also provide ML and lambda-calculus based examples to illustrate its generality

Semantic Component Composition

Building complex software systems necessitates the use of component-based architectures. In theory, of the set of components needed for a design, only some small portion of them are "custom"; the rest are reused or refactored existing pieces of software. Unfortunately, this is an idealized situation. Just because two components should work together does not mean that they will work together. The "glue" that holds components together is not just technology. The contracts that bind complex systems together implicitly define more than their explicit type. These "conceptual contracts" describe essential aspects of extra-system semantics: e.g., object models, type systems, data representation, interface action semantics, legal and contractual obligations, and more. Designers and developers spend inordinate amounts of time technologically duct-taping systems to fulfill these conceptual contracts because system-wide semantics have not been rigorously characterized or codified. This paper describes a formal characterization of the problem and discusses an initial implementation of the resulting theoretical system.Comment: 9 pages, submitted to GCSE/SAIG '0

The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation

Background. &#xd;&#xa;The complexity and inter-related nature of biological data poses a difficult challenge for data and tool integration. There has been a proliferation of interoperability standards and projects over the past decade, none of which has been widely adopted by the bioinformatics community. Recent attempts have focused on the use of semantics to assist integration, and Semantic Web technologies are being welcomed by this community.&#xd;&#xa;&#xd;&#xa;Description. &#xd;&#xa;SADI &#x2013; Semantic Automated Discovery and Integration &#x2013; is a lightweight set of fully standards-compliant Semantic Web service design patterns that simplify the publication of services of the type commonly found in bioinformatics and other scientific domains. Using Semantic Web technologies at every level of the Web services &#x201c;stack&#x201d;, SADI services consume and produce instances of OWL Classes following a small number of very straightforward best-practices. In addition, we provide codebases that support these best-practices, and plug-in tools to popular developer and client software that dramatically simplify deployment of services by providers, and the discovery and utilization of those services by their consumers.&#xd;&#xa;&#xd;&#xa;Conclusions.&#xd;&#xa;SADI Services are fully compliant with, and utilize only foundational Web standards; are simple to create and maintain for service providers; and can be discovered and utilized in a very intuitive way by biologist end-users. In addition, the SADI design patterns significantly improve the ability of software to automatically discover appropriate services based on user-needs, and automatically chain these into complex analytical workflows. We show that, when resources are exposed through SADI, data compliant with a given ontological model can be automatically gathered, or generated, from these distributed, non-coordinating resources - a behavior we have not observed in any other Semantic system. Finally, we show that, using SADI, data dynamically generated from Web services can be explored in a manner very similar to data housed in static triple-stores, thus facilitating the intersection of Web services and Semantic Web technologies