Scalable String and Suffix Sorting: Algorithms, Techniques, and Tools

This dissertation focuses on two fundamental sorting problems: string sorting and suffix sorting. The first part considers parallel string sorting on shared-memory multi-core machines, the second part external memory suffix sorting using the induced sorting principle, and the third part distributed external memory suffix sorting with a new distributed algorithmic big data framework named Thrill.Comment: 396 pages, dissertation, Karlsruher Instituts f\"ur Technologie (2018). arXiv admin note: text overlap with arXiv:1101.3448 by other author

Scalable Architecture for Integrated Batch and Streaming Analysis of Big Data

Thesis (Ph.D.) - Indiana University, Computer Sciences, 2015As Big Data processing problems evolve, many modern applications demonstrate special characteristics. Data exists in the form of both large historical datasets and high-speed real-time streams, and many analysis pipelines require integrated parallel batch processing and stream processing. Despite the large size of the whole dataset, most analyses focus on specific subsets according to certain criteria. Correspondingly, integrated support for efficient queries and post- query analysis is required. To address the system-level requirements brought by such characteristics, this dissertation proposes a scalable architecture for integrated queries, batch analysis, and streaming analysis of Big Data in the cloud. We verify its effectiveness using a representative application domain - social media data analysis - and tackle related research challenges emerging from each module of the architecture by integrating and extending multiple state-of-the-art Big Data storage and processing systems. In the storage layer, we reveal that existing text indexing techniques do not work well for the unique queries of social data, which put constraints on both textual content and social context. To address this issue, we propose a flexible indexing framework over NoSQL databases to support fully customizable index structures, which can embed necessary social context information for efficient queries. The batch analysis module demonstrates that analysis workflows consist of multiple algorithms with different computation and communication patterns, which are suitable for different processing frameworks. To achieve efficient workflows, we build an integrated analysis stack based on YARN, and make novel use of customized indices in developing sophisticated analysis algorithms. In the streaming analysis module, the high-dimensional data representation of social media streams poses special challenges to the problem of parallel stream clustering. Due to the sparsity of the high-dimensional data, traditional synchronization method becomes expensive and severely impacts the scalability of the algorithm. Therefore, we design a novel strategy that broadcasts the incremental changes rather than the whole centroids of the clusters to achieve scalable parallel stream clustering algorithms. Performance tests using real applications show that our solutions for parallel data loading/indexing, queries, analysis tasks, and stream clustering all significantly outperform implementations using current state-of-the-art technologies

Titan A High-Performance Remote-Sensing Database

There are two major challenges for a high-performance remote-sensing database. First, it must provide low-latency retrieval of very large volumes of spatio-temporal data. This requires effective declustering and placement of a multi-dimensional dataset onto a large disk farm. Second, the order of magnitude reduction in data-size due to post-processing makes it imperative, from a performance perspective, that the postprocessing be done on the machine that holds the data. This requires careful coordination of computation and data retrieval. This paper describes the design, implementation and evaluation of {\em Titan}, a parallel shared-nothing database designed for handling remote-sensing data. The computational platform for Titan is a 16-processor IBM SP-2 with four fast disks attached to each processor. Titan is currently operational and contains about 24~GB of data from the Advanced Very High Resolution Radiometer (AVHRR) on the NOAA-7 satellite. The experimental results show that Titan provides good performance for global queries, and interactive response times for local queries. (Also cross-referenced as UMIACS-TR-96-67

High Performance Spatial Indexing for Parallel I/O and Centralized Architectures

Recently, spatial databases have attracted increasing interest in the database field. Because of the volume of the data with which they deal with, the performance of spatial database systems' is important. The R-tree is an efficient spatial access method. It is a generalization of the B-tree in multidimensional space. This thesis investigates how to improve the performance of R-trees. We consider both parallel I/O and centralized architectures. For a parallel I/O environment we propose an R-tree design for a server with one CPU and multiple disks. On this architecture, the nodes of the R-tree are distributed between the different disks with cross-disk pointers ( 'Multiplezed R-tree a). When a new node is created we have to decide on which disk it will be stored. We propose and examine several criteria for choosing a disk for a new node. The most successful one, termed 'Prozimity Indew' or PI, estimates the similarity of the new node to other R-tree nodes already on a disk and chooses the disk with the least degree of similarity. For a centralized environment, we propose a new packing technique for R-trees for static databases. We use space-filling curves, and specifically the Hilbert curve, to achieve better ordering of rectangles and eventually to achieve better packing. For dynamic databases we introduce the filbert R-tree, in which every node has a well defined set of sibling nodes; we can thus use the concept of local rotation [47]. By adjusting the split policy, the Filbert R-tree can achieve a degree of space utilization as high as is desired. (Also cross-referenced as UMIACS-TR-94-131

Process algebra approach to parallel DBMS performance modelling

Abstract unavailable please refer to PD

Efficient Reorganisation of Hybrid Index Structures Supporting Multimedia Search Criteria

This thesis describes the development and setup of hybrid index structures. They are access methods for retrieval techniques in hybrid data spaces which are formed by one or more relational or normalised columns in conjunction with one non-relational or non-normalised column. Examples for these hybrid data spaces are, among others, textual data combined with geographical ones or data from enterprise content management systems. However, all non-relational data types may be stored as well as image feature vectors or comparable types. Hybrid index structures are known to function efficiently regarding retrieval operations. Unfortunately, little information is available about reorganisation operations which insert or update the row tuples. The fundamental research is mainly executed in simulation based environments. This work is written ensuing from a previous thesis that implements hybrid access structures in realistic database surroundings. During this implementation it has become obvious that retrieval works efficiently. Yet, the restructuring approaches require too much effort to be set up, e.g., in web search engine environments where several thousands of documents are inserted or modified every day. These search engines rely on relational database systems as storage backends. Hence, the setup of these access methods for hybrid data spaces is required in real world database management systems. This thesis tries to apply a systematic approach for the optimisation of the rearrangement algorithms inside realistic scenarios. Thus, a measurement and evaluation scheme is created which is repeatedly deployed to an evolving state and a model of hybrid index structures in order to optimise the regrouping algorithms to make a setup of hybrid index structures in real world information systems possible. Thus, a set of input corpora is selected which is applied to the test suite as well as an evaluation scheme. To sum up, it can be said that this thesis describes input sets, a test suite including an evaluation scheme as well as optimisation iterations on reorganisation algorithms reflecting a theoretical model framework to provide efficient reorganisations of hybrid index structures supporting multimedia search criteria

WRITE-INTENSIVE DATA MANAGEMENT IN LOG-STRUCTURED STORAGE

Ph.DDOCTOR OF PHILOSOPH

Density-Aware Linear Algebra in a Column-Oriented In-Memory Database System

Linear algebra operations appear in nearly every application in advanced analytics, machine learning, and of various science domains. Until today, many data analysts and scientists tend to use statistics software packages or hand-crafted solutions for their analysis. In the era of data deluge, however, the external statistics packages and custom analysis programs that often run on single-workstations are incapable to keep up with the vast increase in data volume and size. In particular, there is an increasing demand of scientists for large scale data manipulation, orchestration, and advanced data management capabilities. These are among the key features of a mature relational database management system (DBMS). With the rise of main memory database systems, it now has become feasible to also consider applications that built up on linear algebra. This thesis presents a deep integration of linear algebra functionality into an in-memory column-oriented database system. In particular, this work shows that it has become feasible to execute linear algebra queries on large data sets directly in a DBMS-integrated engine (LAPEG), without the need of transferring data and being restricted by hard disc latencies. From various application examples that are cited in this work, we deduce a number of requirements that are relevant for a database system that includes linear algebra functionality. Beside the deep integration of matrices and numerical algorithms, these include optimization of expressions, transparent matrix handling, scalability and data-parallelism, and data manipulation capabilities. These requirements are addressed by our linear algebra engine. In particular, the core contributions of this thesis are: firstly, we show that the columnar storage layer of an in-memory DBMS yields an easy adoption of efficient sparse matrix data types and algorithms. Furthermore, we show that the execution of linear algebra expressions significantly benefits from different techniques that are inspired from database technology. In a novel way, we implemented several of these optimization strategies in LAPEG’s optimizer (SpMachO), which uses an advanced density estimation method (SpProdest) to predict the matrix density of intermediate results. Moreover, we present an adaptive matrix data type AT Matrix to obviate the need of scientists for selecting appropriate matrix representations. The tiled substructure of AT Matrix is exploited by our matrix multiplication to saturate the different sockets of a multicore main-memory platform, reaching up to a speed-up of 6x compared to alternative approaches. Finally, a major part of this thesis is devoted to the topic of data manipulation; where we propose a matrix manipulation API and present different mutable matrix types to enable fast insertions and deletes. We finally conclude that our linear algebra engine is well-suited to process dynamic, large matrix workloads in an optimized way. In particular, the DBMS-integrated LAPEG is filling the linear algebra gap, and makes columnar in-memory DBMS attractive as efficient, scalable ad-hoc analysis platform for scientists