Learning to Segment Breast Biopsy Whole Slide Images

We trained and applied an encoder-decoder model to semantically segment breast biopsy images into biologically meaningful tissue labels. Since conventional encoder-decoder networks cannot be applied directly on large biopsy images and the different sized structures in biopsies present novel challenges, we propose four modifications: (1) an input-aware encoding block to compensate for information loss, (2) a new dense connection pattern between encoder and decoder, (3) dense and sparse decoders to combine multi-level features, (4) a multi-resolution network that fuses the results of encoder-decoders run on different resolutions. Our model outperforms a feature-based approach and conventional encoder-decoders from the literature. We use semantic segmentations produced with our model in an automated diagnosis task and obtain higher accuracies than a baseline approach that employs an SVM for feature-based segmentation, both using the same segmentation-based diagnostic features.Comment: Added more WSI images in appendi

LEARNet Dynamic Imaging Network for Micro Expression Recognition

Unlike prevalent facial expressions, micro expressions have subtle, involuntary muscle movements which are short-lived in nature. These minute muscle movements reflect true emotions of a person. Due to the short duration and low intensity, these micro-expressions are very difficult to perceive and interpret correctly. In this paper, we propose the dynamic representation of micro-expressions to preserve facial movement information of a video in a single frame. We also propose a Lateral Accretive Hybrid Network (LEARNet) to capture micro-level features of an expression in the facial region. The LEARNet refines the salient expression features in accretive manner by incorporating accretion layers (AL) in the network. The response of the AL holds the hybrid feature maps generated by prior laterally connected convolution layers. Moreover, LEARNet architecture incorporates the cross decoupled relationship between convolution layers which helps in preserving the tiny but influential facial muscle change information. The visual responses of the proposed LEARNet depict the effectiveness of the system by preserving both high- and micro-level edge features of facial expression. The effectiveness of the proposed LEARNet is evaluated on four benchmark datasets: CASME-I, CASME-II, CAS(ME)^2 and SMIC. The experimental results after investigation show a significant improvement of 4.03%, 1.90%, 1.79% and 2.82% as compared with ResNet on CASME-I, CASME-II, CAS(ME)^2 and SMIC datasets respectively.Comment: Dynamic imaging, accretion, lateral, micro expression recognitio