Transforming triangulations on non planar-surfaces

We consider whether any two triangulations of a polygon or a point set on a non-planar surface with a given metric can be transformed into each other by a sequence of edge flips. The answer is negative in general with some remarkable exceptions, such as polygons on the cylinder, and on the flat torus, and certain configurations of points on the cylinder.Comment: 19 pages, 17 figures. This version has been accepted in the SIAM Journal on Discrete Mathematics. Keywords: Graph of triangulations, triangulations on surfaces, triangulations of polygons, edge fli

Discrete Geometric Structures in Homogenization and Inverse Homogenization with application to EIT

We introduce a new geometric approach for the homogenization and inverse homogenization of the divergence form elliptic operator with rough conductivity coefficients $\sigma(x)$ in dimension two. We show that conductivity coefficients are in one-to-one correspondence with divergence-free matrices and convex functions $s(x)$ over the domain $\Omega$. Although homogenization is a non-linear and non-injective operator when applied directly to conductivity coefficients, homogenization becomes a linear interpolation operator over triangulations of $\Omega$ when re-expressed using convex functions, and is a volume averaging operator when re-expressed with divergence-free matrices. Using optimal weighted Delaunay triangulations for linearly interpolating convex functions, we obtain an optimally robust homogenization algorithm for arbitrary rough coefficients. Next, we consider inverse homogenization and show how to decompose it into a linear ill-posed problem and a well-posed non-linear problem. We apply this new geometric approach to Electrical Impedance Tomography (EIT). It is known that the EIT problem admits at most one isotropic solution. If an isotropic solution exists, we show how to compute it from any conductivity having the same boundary Dirichlet-to-Neumann map. It is known that the EIT problem admits a unique (stable with respect to $G$-convergence) solution in the space of divergence-free matrices. As such we suggest that the space of convex functions is the natural space in which to parameterize solutions of the EIT problem

Structural graph matching using the EM algorithm and singular value decomposition

This paper describes an efficient algorithm for inexact graph matching. The method is purely structural, that is, it uses only the edge or connectivity structure of the graph and does not draw on node or edge attributes. We make two contributions: 1) commencing from a probability distribution for matching errors, we show how the problem of graph matching can be posed as maximum-likelihood estimation using the apparatus of the EM algorithm; and 2) we cast the recovery of correspondence matches between the graph nodes in a matrix framework. This allows one to efficiently recover correspondence matches using the singular value decomposition. We experiment with the method on both real-world and synthetic data. Here, we demonstrate that the method offers comparable performance to more computationally demanding method

Paraiso : An Automated Tuning Framework for Explicit Solvers of Partial Differential Equations

We propose Paraiso, a domain specific language embedded in functional programming language Haskell, for automated tuning of explicit solvers of partial differential equations (PDEs) on GPUs as well as multicore CPUs. In Paraiso, one can describe PDE solving algorithms succinctly using tensor equations notation. Hydrodynamic properties, interpolation methods and other building blocks are described in abstract, modular, re-usable and combinable forms, which lets us generate versatile solvers from little set of Paraiso source codes. We demonstrate Paraiso by implementing a compressive hydrodynamics solver. A single source code less than 500 lines can be used to generate solvers of arbitrary dimensions, for both multicore CPUs and GPUs. We demonstrate both manual annotation based tuning and evolutionary computing based automated tuning of the program.Comment: 52 pages, 14 figures, accepted for publications in Computational Science and Discover

Approximations on minimum weight pseudo-triangulation problem using ant colony optimization

In this work, we consider the Minimum Weight Pseudo-Triangulation (MWPT) problem of a given set of n points in the plane. Globally optimal pseudo-triangulations with respect to the weight, as optimization criteria, are difficult to be found by deterministic methods, since no polynomial algorithm is known. We show how the Ant Colony Optimization (ACO) metaheuristic can be used to find high quality pseudo-triangulations of minimum weight. We present the experimental and statistical study based on our own set of instances since no reference to benchmarks for these problems were found in the literature. Throughout the experimental evaluation, we appraise the ACO metaheuristic performance for MWPT problem

Using ACO metaheuristic for MWT problem

Globally optimal triangulations are difficult to be found by deterministic methods as, for most type of criteria, no polynomial algorithm is known. In this work, we consider the Minimum Weight Triangulation (MWT) problem of a given set of n points in the plane. This paper shows how the Ant Colony Optimization (ACO) metaheuristic can be used to find high quality triangulations. For the experimental study we have created a set of instances for MWT problem since no reference to benchmarks for these problems were found in the literature. Through the experimental evaluation, we assess the applicability of the ACO metaheuristic for MWT problem

Graph edit distance from spectral seriation

This paper is concerned with computing graph edit distance. One of the criticisms that can be leveled at existing methods for computing graph edit distance is that they lack some of the formality and rigor of the computation of string edit distance. Hence, our aim is to convert graphs to string sequences so that string matching techniques can be used. To do this, we use a graph spectral seriation method to convert the adjacency matrix into a string or sequence order. We show how the serial ordering can be established using the leading eigenvector of the graph adjacency matrix. We pose the problem of graph-matching as a maximum a posteriori probability (MAP) alignment of the seriation sequences for pairs of graphs. This treatment leads to an expression in which the edit cost is the negative logarithm of the a posteriori sequence alignment probability. We compute the edit distance by finding the sequence of string edit operations which minimizes the cost of the path traversing the edit lattice. The edit costs are determined by the components of the leading eigenvectors of the adjacency matrix and by the edge densities of the graphs being matched. We demonstrate the utility of the edit distance on a number of graph clustering problems