3,605 research outputs found
Robust and Fast 3D Scan Alignment using Mutual Information
This paper presents a mutual information (MI) based algorithm for the
estimation of full 6-degree-of-freedom (DOF) rigid body transformation between
two overlapping point clouds. We first divide the scene into a 3D voxel grid
and define simple to compute features for each voxel in the scan. The two scans
that need to be aligned are considered as a collection of these features and
the MI between these voxelized features is maximized to obtain the correct
alignment of scans. We have implemented our method with various simple point
cloud features (such as number of points in voxel, variance of z-height in
voxel) and compared the performance of the proposed method with existing
point-to-point and point-to- distribution registration methods. We show that
our approach has an efficient and fast parallel implementation on GPU, and
evaluate the robustness and speed of the proposed algorithm on two real-world
datasets which have variety of dynamic scenes from different environments
Most Likely Separation of Intensity and Warping Effects in Image Registration
This paper introduces a class of mixed-effects models for joint modeling of
spatially correlated intensity variation and warping variation in 2D images.
Spatially correlated intensity variation and warp variation are modeled as
random effects, resulting in a nonlinear mixed-effects model that enables
simultaneous estimation of template and model parameters by optimization of the
likelihood function. We propose an algorithm for fitting the model which
alternates estimation of variance parameters and image registration. This
approach avoids the potential estimation bias in the template estimate that
arises when treating registration as a preprocessing step. We apply the model
to datasets of facial images and 2D brain magnetic resonance images to
illustrate the simultaneous estimation and prediction of intensity and warp
effects
Anatomical landmark based registration of contrast enhanced T1-weighted MR images
In many problems involving multiple image analysis, an im- age registration step is required. One such problem appears in brain tumor imaging, where baseline and follow-up image volumes from a tu- mor patient are often to-be compared. Nature of the registration for a change detection problem in brain tumor growth analysis is usually rigid or affine. Contrast enhanced T1-weighted MR images are widely used in clinical practice for monitoring brain tumors. Over this modality, con- tours of the active tumor cells and whole tumor borders and margins are visually enhanced. In this study, a new technique to register serial contrast enhanced T1 weighted MR images is presented. The proposed fully-automated method is based on five anatomical landmarks: eye balls, nose, confluence of sagittal sinus, and apex of superior sagittal sinus. Af- ter extraction of anatomical landmarks from fixed and moving volumes, an affine transformation is estimated by minimizing the sum of squared distances between the landmark coordinates. Final result is refined with a surface registration, which is based on head masks confined to the sur- face of the scalp, as well as to a plane constructed from three of the extracted features. The overall registration is not intensity based, and it depends only on the invariant structures. Validation studies using both synthetically transformed MRI data, and real MRI scans, which included several markers over the head of the patient were performed. In addition, comparison studies against manual landmarks marked by a radiologist, as well as against the results obtained from a typical mutual information based method were carried out to demonstrate the effectiveness of the proposed method
A Statistical Model for Simultaneous Template Estimation, Bias Correction, and Registration of 3D Brain Images
Template estimation plays a crucial role in computational anatomy since it
provides reference frames for performing statistical analysis of the underlying
anatomical population variability. While building models for template
estimation, variability in sites and image acquisition protocols need to be
accounted for. To account for such variability, we propose a generative
template estimation model that makes simultaneous inference of both bias fields
in individual images, deformations for image registration, and variance
hyperparameters. In contrast, existing maximum a posterori based methods need
to rely on either bias-invariant similarity measures or robust image
normalization. Results on synthetic and real brain MRI images demonstrate the
capability of the model to capture heterogeneity in intensities and provide a
reliable template estimation from registration
PVR: Patch-to-Volume Reconstruction for Large Area Motion Correction of Fetal MRI
In this paper we present a novel method for the correction of motion
artifacts that are present in fetal Magnetic Resonance Imaging (MRI) scans of
the whole uterus. Contrary to current slice-to-volume registration (SVR)
methods, requiring an inflexible anatomical enclosure of a single investigated
organ, the proposed patch-to-volume reconstruction (PVR) approach is able to
reconstruct a large field of view of non-rigidly deforming structures. It
relaxes rigid motion assumptions by introducing a specific amount of redundant
information that is exploited with parallelized patch-wise optimization,
super-resolution, and automatic outlier rejection. We further describe and
provide an efficient parallel implementation of PVR allowing its execution
within reasonable time on commercially available graphics processing units
(GPU), enabling its use in the clinical practice. We evaluate PVR's
computational overhead compared to standard methods and observe improved
reconstruction accuracy in presence of affine motion artifacts of approximately
30% compared to conventional SVR in synthetic experiments. Furthermore, we have
evaluated our method qualitatively and quantitatively on real fetal MRI data
subject to maternal breathing and sudden fetal movements. We evaluate
peak-signal-to-noise ratio (PSNR), structural similarity index (SSIM), and
cross correlation (CC) with respect to the originally acquired data and provide
a method for visual inspection of reconstruction uncertainty. With these
experiments we demonstrate successful application of PVR motion compensation to
the whole uterus, the human fetus, and the human placenta.Comment: 10 pages, 13 figures, submitted to IEEE Transactions on Medical
Imaging. v2: wadded funders acknowledgements to preprin
Automatic landmark annotation and dense correspondence registration for 3D human facial images
Dense surface registration of three-dimensional (3D) human facial images
holds great potential for studies of human trait diversity, disease genetics,
and forensics. Non-rigid registration is particularly useful for establishing
dense anatomical correspondences between faces. Here we describe a novel
non-rigid registration method for fully automatic 3D facial image mapping. This
method comprises two steps: first, seventeen facial landmarks are automatically
annotated, mainly via PCA-based feature recognition following 3D-to-2D data
transformation. Second, an efficient thin-plate spline (TPS) protocol is used
to establish the dense anatomical correspondence between facial images, under
the guidance of the predefined landmarks. We demonstrate that this method is
robust and highly accurate, even for different ethnicities. The average face is
calculated for individuals of Han Chinese and Uyghur origins. While fully
automatic and computationally efficient, this method enables high-throughput
analysis of human facial feature variation.Comment: 33 pages, 6 figures, 1 tabl
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