The Complexity of Counting Homomorphisms to Cactus Graphs Modulo 2

A homomorphism from a graph G to a graph H is a function from V(G) to V(H) that preserves edges. Many combinatorial structures that arise in mathematics and computer science can be represented naturally as graph homomorphisms and as weighted sums of graph homomorphisms. In this paper, we study the complexity of counting homomorphisms modulo 2. The complexity of modular counting was introduced by Papadimitriou and Zachos and it has been pioneered by Valiant who famously introduced a problem for which counting modulo 7 is easy but counting modulo 2 is intractable. Modular counting provides a rich setting in which to study the structure of homomorphism problems. In this case, the structure of the graph H has a big influence on the complexity of the problem. Thus, our approach is graph-theoretic. We give a complete solution for the class of cactus graphs, which are connected graphs in which every edge belongs to at most one cycle. Cactus graphs arise in many applications such as the modelling of wireless sensor networks and the comparison of genomes. We show that, for some cactus graphs H, counting homomorphisms to H modulo 2 can be done in polynomial time. For every other fixed cactus graph H, the problem is complete for the complexity class parity-P which is a wide complexity class to which every problem in the polynomial hierarchy can be reduced (using randomised reductions). Determining which H lead to tractable problems can be done in polynomial time. Our result builds upon the work of Faben and Jerrum, who gave a dichotomy for the case in which H is a tree.Comment: minor change

Computing symmetry groups of polyhedra

Knowing the symmetries of a polyhedron can be very useful for the analysis of its structure as well as for practical polyhedral computations. In this note, we study symmetry groups preserving the linear, projective and combinatorial structure of a polyhedron. In each case we give algorithmic methods to compute the corresponding group and discuss some practical experiences. For practical purposes the linear symmetry group is the most important, as its computation can be directly translated into a graph automorphism problem. We indicate how to compute integral subgroups of the linear symmetry group that are used for instance in integer linear programming.Comment: 20 pages, 1 figure; containing a corrected and improved revisio

Symmetry-breaking Answer Set Solving

In the context of Answer Set Programming, this paper investigates symmetry-breaking to eliminate symmetric parts of the search space and, thereby, simplify the solution process. We propose a reduction of disjunctive logic programs to a coloured digraph such that permutational symmetries can be constructed from graph automorphisms. Symmetries are then broken by introducing symmetry-breaking constraints. For this purpose, we formulate a preprocessor that integrates a graph automorphism system. Experiments demonstrate its computational impact.Comment: Proceedings of ICLP'10 Workshop on Answer Set Programming and Other Computing Paradig

Symmetry Breaking for Answer Set Programming

In the context of answer set programming, this work investigates symmetry detection and symmetry breaking to eliminate symmetric parts of the search space and, thereby, simplify the solution process. We contribute a reduction of symmetry detection to a graph automorphism problem which allows to extract symmetries of a logic program from the symmetries of the constructed coloured graph. We also propose an encoding of symmetry-breaking constraints in terms of permutation cycles and use only generators in this process which implicitly represent symmetries and always with exponential compression. These ideas are formulated as preprocessing and implemented in a completely automated flow that first detects symmetries from a given answer set program, adds symmetry-breaking constraints, and can be applied to any existing answer set solver. We demonstrate computational impact on benchmarks versus direct application of the solver. Furthermore, we explore symmetry breaking for answer set programming in two domains: first, constraint answer set programming as a novel approach to represent and solve constraint satisfaction problems, and second, distributed nonmonotonic multi-context systems. In particular, we formulate a translation-based approach to constraint answer set solving which allows for the application of our symmetry detection and symmetry breaking methods. To compare their performance with a-priori symmetry breaking techniques, we also contribute a decomposition of the global value precedence constraint that enforces domain consistency on the original constraint via the unit-propagation of an answer set solver. We evaluate both options in an empirical analysis. In the context of distributed nonmonotonic multi-context system, we develop an algorithm for distributed symmetry detection and also carry over symmetry-breaking constraints for distributed answer set programming.Comment: Diploma thesis. Vienna University of Technology, August 201

The Complexity of Rooted Phylogeny Problems

Several computational problems in phylogenetic reconstruction can be formulated as restrictions of the following general problem: given a formula in conjunctive normal form where the literals are rooted triples, is there a rooted binary tree that satisfies the formula? If the formulas do not contain disjunctions, the problem becomes the famous rooted triple consistency problem, which can be solved in polynomial time by an algorithm of Aho, Sagiv, Szymanski, and Ullman. If the clauses in the formulas are restricted to disjunctions of negated triples, Ng, Steel, and Wormald showed that the problem remains NP-complete. We systematically study the computational complexity of the problem for all such restrictions of the clauses in the input formula. For certain restricted disjunctions of triples we present an algorithm that has sub-quadratic running time and is asymptotically as fast as the fastest known algorithm for the rooted triple consistency problem. We also show that any restriction of the general rooted phylogeny problem that does not fall into our tractable class is NP-complete, using known results about the complexity of Boolean constraint satisfaction problems. Finally, we present a pebble game argument that shows that the rooted triple consistency problem (and also all generalizations studied in this paper) cannot be solved by Datalog

Cores of Countably Categorical Structures

A relational structure is a core, if all its endomorphisms are embeddings. This notion is important for computational complexity classification of constraint satisfaction problems. It is a fundamental fact that every finite structure has a core, i.e., has an endomorphism such that the structure induced by its image is a core; moreover, the core is unique up to isomorphism. Weprove that every \omega -categorical structure has a core. Moreover, every \omega-categorical structure is homomorphically equivalent to a model-complete core, which is unique up to isomorphism, and which is finite or \omega -categorical. We discuss consequences for constraint satisfaction with \omega -categorical templates

Homomorphic encryption and some black box attacks

This paper is a compressed summary of some principal definitions and concepts in the approach to the black box algebra being developed by the authors. We suggest that black box algebra could be useful in cryptanalysis of homomorphic encryption schemes, and that homomorphic encryption is an area of research where cryptography and black box algebra may benefit from exchange of ideas