294,576 research outputs found
Notions of optimal transport theory and how to implement them on a computer
This article gives an introduction to optimal transport, a mathematical
theory that makes it possible to measure distances between functions (or
distances between more general objects), to interpolate between objects or to
enforce mass/volume conservation in certain computational physics simulations.
Optimal transport is a rich scientific domain, with active research
communities, both on its theoretical aspects and on more applicative
considerations, such as geometry processing and machine learning. This article
aims at explaining the main principles behind the theory of optimal transport,
introduce the different involved notions, and more importantly, how they
relate, to let the reader grasp an intuition of the elegant theory that
structures them. Then we will consider a specific setting, called
semi-discrete, where a continuous function is transported to a discrete sum of
Dirac masses. Studying this specific setting naturally leads to an efficient
computational algorithm, that uses classical notions of computational geometry,
such as a generalization of Voronoi diagrams called Laguerre diagrams.Comment: 32 pages, 17 figure
A Moving Boundary Flux Stabilization Method for Cartesian Cut-Cell Grids using Directional Operator Splitting
An explicit moving boundary method for the numerical solution of
time-dependent hyperbolic conservation laws on grids produced by the
intersection of complex geometries with a regular Cartesian grid is presented.
As it employs directional operator splitting, implementation of the scheme is
rather straightforward. Extending the method for static walls from Klein et
al., Phil. Trans. Roy. Soc., A367, no. 1907, 4559-4575 (2009), the scheme
calculates fluxes needed for a conservative update of the near-wall cut-cells
as linear combinations of standard fluxes from a one-dimensional extended
stencil. Here the standard fluxes are those obtained without regard to the
small sub-cell problem, and the linear combination weights involve detailed
information regarding the cut-cell geometry. This linear combination of
standard fluxes stabilizes the updates such that the time-step yielding
marginal stability for arbitrarily small cut-cells is of the same order as that
for regular cells. Moreover, it renders the approach compatible with a wide
range of existing numerical flux-approximation methods. The scheme is extended
here to time dependent rigid boundaries by reformulating the linear combination
weights of the stabilizing flux stencil to account for the time dependence of
cut-cell volume and interface area fractions. The two-dimensional tests
discussed include advection in a channel oriented at an oblique angle to the
Cartesian computational mesh, cylinders with circular and triangular
cross-section passing through a stationary shock wave, a piston moving through
an open-ended shock tube, and the flow around an oscillating NACA 0012 aerofoil
profile.Comment: 30 pages, 27 figures, 3 table
Mechanistic and pathological study of the genesis, growth, and rupture of abdominal aortic aneurysms
Postprint (published version
Arbitrary-Lagrangian-Eulerian discontinuous Galerkin schemes with a posteriori subcell finite volume limiting on moving unstructured meshes
We present a new family of high order accurate fully discrete one-step
Discontinuous Galerkin (DG) finite element schemes on moving unstructured
meshes for the solution of nonlinear hyperbolic PDE in multiple space
dimensions, which may also include parabolic terms in order to model
dissipative transport processes. High order piecewise polynomials are adopted
to represent the discrete solution at each time level and within each spatial
control volume of the computational grid, while high order of accuracy in time
is achieved by the ADER approach. In our algorithm the spatial mesh
configuration can be defined in two different ways: either by an isoparametric
approach that generates curved control volumes, or by a piecewise linear
decomposition of each spatial control volume into simplex sub-elements. Our
numerical method belongs to the category of direct
Arbitrary-Lagrangian-Eulerian (ALE) schemes, where a space-time conservation
formulation of the governing PDE system is considered and which already takes
into account the new grid geometry directly during the computation of the
numerical fluxes. Our new Lagrangian-type DG scheme adopts the novel a
posteriori sub-cell finite volume limiter method, in which the validity of the
candidate solution produced in each cell by an unlimited ADER-DG scheme is
verified against a set of physical and numerical detection criteria. Those
cells which do not satisfy all of the above criteria are flagged as troubled
cells and are recomputed with a second order TVD finite volume scheme. The
numerical convergence rates of the new ALE ADER-DG schemes are studied up to
fourth order in space and time and several test problems are simulated.
Finally, an application inspired by Inertial Confinement Fusion (ICF) type
flows is considered by solving the Euler equations and the PDE of viscous and
resistive magnetohydrodynamics (VRMHD).Comment: 39 pages, 21 figure
High-order conservative reconstruction schemes for finite volume methods in cylindrical and spherical coordinates
High-order reconstruction schemes for the solution of hyperbolic conservation
laws in orthogonal curvilinear coordinates are revised in the finite volume
approach. The formulation employs a piecewise polynomial approximation to the
zone-average values to reconstruct left and right interface states from within
a computational zone to arbitrary order of accuracy by inverting a
Vandermonde-like linear system of equations with spatially varying
coefficients. The approach is general and can be used on uniform and
non-uniform meshes although explicit expressions are derived for polynomials
from second to fifth degree in cylindrical and spherical geometries with
uniform grid spacing. It is shown that, in regions of large curvature, the
resulting expressions differ considerably from their Cartesian counterparts and
that the lack of such corrections can severely degrade the accuracy of the
solution close to the coordinate origin. Limiting techniques and monotonicity
constraints are revised for conventional reconstruction schemes, namely, the
piecewise linear method (PLM), third-order weighted essentially non-oscillatory
(WENO) scheme and the piecewise parabolic method (PPM).
The performance of the improved reconstruction schemes is investigated in a
number of selected numerical benchmarks involving the solution of both scalar
and systems of nonlinear equations (such as the equations of gas dynamics and
magnetohydrodynamics) in cylindrical and spherical geometries in one and two
dimensions. Results confirm that the proposed approach yields considerably
smaller errors, higher convergence rates and it avoid spurious numerical
effects at a symmetry axis.Comment: 37 pages, 12 Figures. Accepted for publication in Journal of
Compuational Physic
Phase-field boundary conditions for the voxel finite cell method: surface-free stress analysis of CT-based bone structures
The voxel finite cell method employs unfitted finite element meshes and voxel quadrature rules to seamlessly
transfer CT data into patient-specific bone discretizations. The method, however, still requires the explicit
parametrization of boundary surfaces to impose traction and displacement boundary conditions, which
constitutes a potential roadblock to automation. We explore a phase-field based formulation for imposing
traction and displacement constraints in a diffuse sense. Its essential component is a diffuse geometry model
generated from metastable phase-field solutions of the Allen-Cahn problem that assumes the imaging data as
initial condition. Phase-field approximations of the boundary and its gradient are then employed to transfer
all boundary terms in the variational formulation into volumetric terms. We show that in the context of the
voxel finite cell method, diffuse boundary conditions achieve the same accuracy as boundary conditions
defined over explicit sharp surfaces, if the inherent length scales, i.e., the interface width of the phase-field,
the voxel spacing and the mesh size, are properly related. We demonstrate the flexibility of the new method
by analyzing stresses in a human femur and a vertebral body
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