Modeling Real-Time 3-D Lung Deformations for Medical Visualization

In this paper, we propose a physics-based and physiology-based approach for modeling real-time deformations of 3-D high-resolution polygonal lung models obtained from high-resolution computed tomography (HRCT) images of normal human subjects. The physics-based deformation operator is nonsymmetric, which accounts for the heterogeneous elastic properties of the lung tissue and spatial-dynamic flow properties of the air. An iterative approach is used to estimate the deformation with the deformation operator initialized based on the regional alveolar expandability, a key physiology-based parameter. The force applied on each surface node is based on the airflow pattern inside the lungs, which is known to be based on the orientation of the human subject. The validation of lung dynamics is done by resimulating the lung deformation and comparing it with HRCT data and computing force applied on each node derived from a 4-D HRCT dataset of a normal human subject using the proposed deformation operator and verifying its gradient with the orientation

Airflow and Particle Deposition Simulations in Health and Emphysema: From In Vivo to In Silico Animal Experiments

International audienceImage-based in-silico modeling tools provide detailed velocity and particle deposition data. However, care must be taken when prescribing boundary conditions to model lung physiology in health or disease, such as in emphysema. In this study, the respiratory resistance and compliance were obtained by solving an inverse problem; a 0D global model based on healthy and emphysematous rat experimental data. Multi-scale CFD simulations were performed by solving the 3D Navier Stokes equations in an MRI-derived rat geometry coupled to a 0D model. Particles with 0.95 um diameter were tracked and their distribution in the lung was assessed. Seven 3D-0D simulations were performed: healthy, homogeneous, and five heterogeneous emphysema cases. Compliance (C) was significantly higher (p = 0.04) in the emphysematous rats (C = 0.37 +/- 0.14 cm^3 / cmH_2O) compared to the healthy rats (C = 0.25 +/- 0 0.04 cm^3 / cmH_2O), while the resistance remained unchanged (p = 0.83). There were increases in airflow, particle deposition in the 3D model, and particle delivery to the diseased regions for the heterogeneous cases compared to the homogeneous cases. The results highlight the importance of multi-scale numerical simulations to study airflow and particle distribution in healthy and diseased lungs. The effect of particle size and gravity were studied. Once available, these in-silico predictions may be compared to experimental deposition data

Unveiling advanced mechanisms of inhalable drug aerosol dynamics using computational fluid dynamics and discrete element method

Capsule-based dry powder inhalers (DPIs) are widely used to treat chronic obstructive pulmonary disease (COPD) by delivering active pharmaceutical ingredients (APIs) via inhalation into human respiratory systems. Previous research has shown that the actuation flow rate, aerodynamic particle size distribution (APSD), and particle shape of lactose carriers are factors that can influence the particle deposition patterns in human respiratory systems. Understanding the dynamics of APIs transport in DPIs and airways can provide significant value for the design optimization of DPIs and particle shapes to enhance the delivery of APIs to the designated lung sites, i.e., small airways. Thus, it is necessary to investigate how to modulate the above-mentioned factors to increase the delivery efficacy to small airways and enhance the therapeutic effect to treat COPD. Compared with in vitro and in vivo methods, computational fluid-particle dynamics (CFPD) models allow researchers to study the transport dynamics of inhalable therapeutic dry powders in both DPI and human respiratory systems. However, existing CFPD models neglect particle-particle interactions, and most existing airway models lack peripheral lung airway and neglect the airway deformation kinematics. Such deficiencies can lead to inaccurate predictions of particle transport and deposition. This study developed a one-way coupled computational fluid dynamics (CFD) and discrete element method (DEM) model to simulate the particle-particle and particle-device interactions, and the transport of API-carrier dry powder mixtures with different shapes of carriers in a DPI flow channel. The influence of actuation flow rate (30 to 90 L/min) and particle shape (aspect ratio equals 1, 5, and 10) on lactose carrier dynamics in a representative DPI, i.e., SpirivaTM HandihalerTM, has been investigated. Subsequently, an elastic truncated whole-lung model has also been developed to predict particle transport and deposition from mouth to alveoli, with disease-specific airway deformation kinematics. Numerical results indicate that 90 L/min actuation flow rate generates the highest delivery efficiency of Handihaler, as approximately 26% API reaches the deep lung region. The elastic truncated whole-lung modeling results show that noticeable differences of predictions between static and elastic lung models can be found, which demonstrates the necessity to model airway deformation kinematics in virtual lung models

Modeling, Simulation, And Visualization Of 3d Lung Dynamics

Medical simulation has facilitated the understanding of complex biological phenomenon through its inherent explanatory power. It is a critical component for planning clinical interventions and analyzing its effect on a human subject. The success of medical simulation is evidenced by the fact that over one third of all medical schools in the United States augment their teaching curricula using patient simulators. Medical simulators present combat medics and emergency providers with video-based descriptions of patient symptoms along with step-by-step instructions on clinical procedures that alleviate the patient\u27s condition. Recent advances in clinical imaging technology have led to an effective medical visualization by coupling medical simulations with patient-specific anatomical models and their physically and physiologically realistic organ deformation. 3D physically-based deformable lung models obtained from a human subject are tools for representing regional lung structure and function analysis. Static imaging techniques such as Magnetic Resonance Imaging (MRI), Chest x-rays, and Computed Tomography (CT) are conventionally used to estimate the extent of pulmonary disease and to establish available courses for clinical intervention. The predictive accuracy and evaluative strength of the static imaging techniques may be augmented by improved computer technologies and graphical rendering techniques that can transform these static images into dynamic representations of subject specific organ deformations. By creating physically based 3D simulation and visualization, 3D deformable models obtained from subject-specific lung images will better represent lung structure and function. Variations in overall lung deformations may indicate tissue pathologies, thus 3D visualization of functioning lungs may also provide a visual tool to current diagnostic methods. The feasibility of medical visualization using static 3D lungs as an effective tool for endotracheal intubation was previously shown using Augmented Reality (AR) based techniques in one of the several research efforts at the Optical Diagnostics and Applications Laboratory (ODALAB). This research effort also shed light on the potential usage of coupling such medical visualization with dynamic 3D lungs. The purpose of this dissertation is to develop 3D deformable lung models, which are developed from subject-specific high resolution CT data and can be visualized using the AR based environment. A review of the literature illustrates that the techniques for modeling real-time 3D lung dynamics can be roughly grouped into two categories: Geometrically-based and Physically-based. Additional classifications would include considering a 3D lung model as either a volumetric or surface model, modeling the lungs as either a single-compartment or a multi-compartment, modeling either the air-blood interaction or the air-blood-tissue interaction, and considering either a normal or pathophysical behavior of lungs. Validating the simulated lung dynamics is a complex problem and has been previously approached by tracking a set of landmarks on the CT images. An area that needs to be explored is the relationship between the choice of the deformation method for the 3D lung dynamics and its visualization framework. Constraints on the choice of the deformation method and the 3D model resolution arise from the visualization framework. Such constraints of our interest are the real-time requirement and the level of interaction required with the 3D lung models. The work presented here discusses a framework that facilitates a physics-based and physiology-based deformation of a single-compartment surface lung model that maintains the frame-rate requirements of the visualization system. The framework presented here is part of several research efforts at ODALab for developing an AR based medical visualization framework. The framework consists of 3 components, (i) modeling the Pressure-Volume (PV) relation, (ii) modeling the lung deformation using a Green\u27s function based deformation operator, and (iii) optimizing the deformation using state-of-art Graphics Processing Units (GPU). The validation of the results obtained in the first two modeling steps is also discussed for normal human subjects. Disease states such as Pneumothorax and lung tumors are modeled using the proposed deformation method. Additionally, a method to synchronize the instantiations of the deformation across a network is also discussed

Aerosol Transport Modeling: The Key Link Between Lung Infections of Individuals and Populations

The recent COVID-19 pandemic has propelled the field of aerosol science to the forefront, particularly the central role of virus-laden respiratory droplets and aerosols. The pandemic has also highlighted the critical need, and value for, an information bridge between epidemiological models (that inform policymakers to develop public health responses) and within-host models (that inform the public and health care providers how individuals develop respiratory infections). Here, we review existing data and models of generation of respiratory droplets and aerosols, their exhalation and inhalation, and the fate of infectious droplet transport and deposition throughout the respiratory tract. We then articulate how aerosol transport modeling can serve as a bridge between and guide calibration of within-host and epidemiological models, forming a comprehensive tool to formulate and test hypotheses about respiratory tract exposure and infection within and between individuals

Aerosol Transport Modeling: The Key Link Between Lung Infections of Individuals and Populations

The recent COVID-19 pandemic has propelled the field of aerosol science to the forefront, particularly the central role of virus-laden respiratory droplets and aerosols. The pandemic has also highlighted the critical need, and value for, an information bridge between epidemiological models (that inform policymakers to develop public health responses) and within-host models (that inform the public and health care providers how individuals develop respiratory infections). Here, we review existing data and models of generation of respiratory droplets and aerosols, their exhalation and inhalation, and the fate of infectious droplet transport and deposition throughout the respiratory tract. We then articulate how aerosol transport modeling can serve as a bridge between and guide calibration of within-host and epidemiological models, forming a comprehensive tool to formulate and test hypotheses about respiratory tract exposure and infection within and between individuals

Numerical modelling of additive manufacturing process for stainless steel tension testing samples

Nowadays additive manufacturing (AM) technologies including 3D printing grow rapidly and they are expected to replace conventional subtractive manufacturing technologies to some extents. During a selective laser melting (SLM) process as one of popular AM technologies for metals, large amount of heats is required to melt metal powders, and this leads to distortions and/or shrinkages of additively manufactured parts. It is useful to predict the 3D printed parts to control unwanted distortions and shrinkages before their 3D printing. This study develops a two-phase numerical modelling and simulation process of AM process for 17-4PH stainless steel and it considers the importance of post-processing and the need for calibration to achieve a high-quality printing at the end. By using this proposed AM modelling and simulation process, optimal process parameters, material properties, and topology can be obtained to ensure a part 3D printed successfully

Endoscopic, Anatomic OCT for Imaging and Compliance Measurement of Upper and Central Airways

Both acute airway injuries such as inhalation injury and prevalent but underdiagnosed diseases such as obstructive sleep apnea (OSA) lead not only to impaired quality of life but also to disability or even death. However, current techniques such as bronchoscopy, computed tomography and magnetic resonance imaging all have limitations, such as being semi-quantitative or the exposure to ionizing radiation or long scan times, when it comes to airway imaging. A modality that provides high-resolution, real-time, safe and minimally invasive imaging of the airways would be very beneficial in the diagnosis and treatment of airway diseases. Additionally, changes in the biomechanical properties of airway tissues associated with underlying pathophysiologic status of tissues have not been much explored. Thus, an imaging modality that also has the ability to perform elastography could be valuable in the diagnosis and treatment of inhalation injuries. Optical coherence tomography (OCT) is a rapidly developing imaging modality providing iv high-resolution and non-invasive imaging of tissue microstructure. To image the upper and central airways of pediatric patients, a specific type of OCT -- the swept-source anatomic optical coherence tomography (SSaOCT), which has a micron-level resolution and an imaging range over 10 mm is utilized. It allows direct visualization of features on airway walls as well as sub-surface structures such as cartilage and trachealis muscle. Moreover, aOCT together with a pressure catheter can be used to perform anatomic optical coherence elastography (aOCE) and measure airway compliance to predict the regions of the airway wall that are vulnerable to collapse. This provides additional diagnostic information of airways that is not easily achievable with other imaging modalities. In this dissertation, the design and performance of the two custom-built aOCT systems are described, and their ability to accurately measure airway geometry and compliance is investigated. Imaging of phantoms and animal specimens is performed, aOCE-derived compliance is calculated and the relationship between the compliance measurements and the severity of steam injury is evaluated. Results indicate that aOCT can perform accurate airway imaging as well as assess the compliance of airway tissues. The measured compliance of the airway could potentially be used as an index for grading and assessing the severity of injuries and thus aid in the diagnosis and treatment of airway inhalation injury.Doctor of Philosoph

Book of Abstracts 15th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering and 3rd Conference on Imaging and Visualization

In this edition, the two events will run together as a single conference, highlighting the strong connection with the Taylor & Francis journals: Computer Methods in Biomechanics and Biomedical Engineering (John Middleton and Christopher Jacobs, Eds.) and Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization (JoãoManuel R.S. Tavares, Ed.). The conference has become a major international meeting on computational biomechanics, imaging andvisualization. In this edition, the main program includes 212 presentations. In addition, sixteen renowned researchers will give plenary keynotes, addressing current challenges in computational biomechanics and biomedical imaging. In Lisbon, for the first time, a session dedicated to award the winner of the Best Paper in CMBBE Journal will take place. We believe that CMBBE2018 will have a strong impact on the development of computational biomechanics and biomedical imaging and visualization, identifying emerging areas of research and promoting the collaboration and networking between participants. This impact is evidenced through the well-known research groups, commercial companies and scientific organizations, who continue to support and sponsor the CMBBE meeting series. In fact, the conference is enriched with five workshops on specific scientific topics and commercial software.info:eu-repo/semantics/draf