5,026 research outputs found
The Skip Quadtree: A Simple Dynamic Data Structure for Multidimensional Data
We present a new multi-dimensional data structure, which we call the skip
quadtree (for point data in R^2) or the skip octree (for point data in R^d,
with constant d>2). Our data structure combines the best features of two
well-known data structures, in that it has the well-defined "box"-shaped
regions of region quadtrees and the logarithmic-height search and update
hierarchical structure of skip lists. Indeed, the bottom level of our structure
is exactly a region quadtree (or octree for higher dimensional data). We
describe efficient algorithms for inserting and deleting points in a skip
quadtree, as well as fast methods for performing point location and approximate
range queries.Comment: 12 pages, 3 figures. A preliminary version of this paper appeared in
the 21st ACM Symp. Comp. Geom., Pisa, 2005, pp. 296-30
A well-separated pairs decomposition algorithm for k-d trees implemented on multi-core architectures
Content from this work may be used under the terms of the Creative Commons Attribution 3.0 licence. Any further distribution of this work must maintain attribution to the author(s) and the title of the work, journal citation and DOI.Variations of k-d trees represent a fundamental data structure used in Computational Geometry with numerous applications in science. For example particle track tting in the software of the LHC experiments, and in simulations of N-body systems in the study of dynamics of interacting galaxies, particle beam physics, and molecular dynamics in biochemistry. The many-body tree methods devised by Barnes and Hutt in the 1980s and the Fast Multipole Method introduced in 1987 by Greengard and Rokhlin use variants of k-d trees to reduce the computation time upper bounds to O(n log n) and even O(n) from O(n2). We present an algorithm that uses the principle of well-separated pairs decomposition to always produce compressed trees in O(n log n) work. We present and evaluate parallel implementations for the algorithm that can take advantage of multi-core architectures.The Science and Technology Facilities Council, UK
Spanners for Geometric Intersection Graphs
Efficient algorithms are presented for constructing spanners in geometric
intersection graphs. For a unit ball graph in R^k, a (1+\epsilon)-spanner is
obtained using efficient partitioning of the space into hypercubes and solving
bichromatic closest pair problems. The spanner construction has almost
equivalent complexity to the construction of Euclidean minimum spanning trees.
The results are extended to arbitrary ball graphs with a sub-quadratic running
time.
For unit ball graphs, the spanners have a small separator decomposition which
can be used to obtain efficient algorithms for approximating proximity problems
like diameter and distance queries. The results on compressed quadtrees,
geometric graph separators, and diameter approximation might be of independent
interest.Comment: 16 pages, 5 figures, Late
Compressed k2-Triples for Full-In-Memory RDF Engines
Current "data deluge" has flooded the Web of Data with very large RDF
datasets. They are hosted and queried through SPARQL endpoints which act as
nodes of a semantic net built on the principles of the Linked Data project.
Although this is a realistic philosophy for global data publishing, its query
performance is diminished when the RDF engines (behind the endpoints) manage
these huge datasets. Their indexes cannot be fully loaded in main memory, hence
these systems need to perform slow disk accesses to solve SPARQL queries. This
paper addresses this problem by a compact indexed RDF structure (called
k2-triples) applying compact k2-tree structures to the well-known
vertical-partitioning technique. It obtains an ultra-compressed representation
of large RDF graphs and allows SPARQL queries to be full-in-memory performed
without decompression. We show that k2-triples clearly outperforms
state-of-the-art compressibility and traditional vertical-partitioning query
resolution, remaining very competitive with multi-index solutions.Comment: In Proc. of AMCIS'201
Connectivity Compression for Irregular Quadrilateral Meshes
Applications that require Internet access to remote 3D datasets are often
limited by the storage costs of 3D models. Several compression methods are
available to address these limits for objects represented by triangle meshes.
Many CAD and VRML models, however, are represented as quadrilateral meshes or
mixed triangle/quadrilateral meshes, and these models may also require
compression. We present an algorithm for encoding the connectivity of such
quadrilateral meshes, and we demonstrate that by preserving and exploiting the
original quad structure, our approach achieves encodings 30 - 80% smaller than
an approach based on randomly splitting quads into triangles. We present both a
code with a proven worst-case cost of 3 bits per vertex (or 2.75 bits per
vertex for meshes without valence-two vertices) and entropy-coding results for
typical meshes ranging from 0.3 to 0.9 bits per vertex, depending on the
regularity of the mesh. Our method may be implemented by a rule for a
particular splitting of quads into triangles and by using the compression and
decompression algorithms introduced in [Rossignac99] and
[Rossignac&Szymczak99]. We also present extensions to the algorithm to compress
meshes with holes and handles and meshes containing triangles and other
polygons as well as quads
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