The role of interactive biclusters in sensemaking

Visual exploration of relationships within large, textual datasets is an important aid for human sensemaking. By un-derstanding computed, structural relationships between enti-ties of different types (e.g., people and locations), users can leverage domain expertise and intuition to determine the im-portance and relevance of these relationships for tasks, such as intelligence analysis. Biclusters are a potentially desirable method to facilitate this, because they reveal coordinated rela-tionships that can represent meaningful relations. Bixplorer, a visual analytics prototype, supports interactive exploration of textual datasets in a spatial workspace with biclusters. In this paper, we present results of a study that analyzes how users interact with biclusters to solve an intelligence analysis prob-lem using Bixplorer. We found that biclusters played four principal roles in the analytical process: an effective starting point for analysis, a revealer of two levels of connections, an indicator of potentially important entities, and a useful label for clusters of organized information

Object-oriented data mining

EThOS - Electronic Theses Online ServiceGBUnited Kingdo

Automatic refinement of large-scale cross-domain knowledge graphs

Knowledge graphs are a way to represent complex structured and unstructured information integrated into an ontology, with which one can reason about the existing information to deduce new information or highlight inconsistencies. Knowledge graphs are divided into the terminology box (TBox), also known as ontology, and the assertions box (ABox). The former consists of a set of schema axioms defining classes and properties which describe the data domain. Whereas the ABox consists of a set of facts describing instances in terms of the TBox vocabulary. In the recent years, there have been several initiatives for creating large-scale cross-domain knowledge graphs, both free and commercial, with DBpedia, YAGO, and Wikidata being amongst the most successful free datasets. Those graphs are often constructed with the extraction of information from semi-structured knowledge, such as Wikipedia, or unstructured text from the web using NLP methods. It is unlikely, in particular when heuristic methods are applied and unreliable sources are used, that the knowledge graph is fully correct or complete. There is a tradeoff between completeness and correctness, which is addressed differently in each knowledge graph’s construction approach. There is a wide variety of applications for knowledge graphs, e.g. semantic search and discovery, question answering, recommender systems, expert systems and personal assistants. The quality of a knowledge graph is crucial for its applications. In order to further increase the quality of such large-scale knowledge graphs, various automatic refinement methods have been proposed. Those methods try to infer and add missing knowledge to the graph, or detect erroneous pieces of information. In this thesis, we investigate the problem of automatic knowledge graph refinement and propose methods that address the problem from two directions, automatic refinement of the TBox and of the ABox. In Part I we address the ABox refinement problem. We propose a method for predicting missing type assertions using hierarchical multilabel classifiers and ingoing/ outgoing links as features. We also present an approach to detection of relation assertion errors which exploits type and path patterns in the graph. Moreover, we propose an approach to correction of relation errors originating from confusions between entities. Also in the ABox refinement direction, we propose a knowledge graph model and process for synthesizing knowledge graphs for benchmarking ABox completion methods. In Part II we address the TBox refinement problem. We propose methods for inducing flexible relation constraints from the ABox, which are expressed using SHACL.We introduce an ILP refinement step which exploits correlations between numerical attributes and relations in order to the efficiently learn Horn rules with numerical attributes. Finally, we investigate the introduction of lexical information from textual corpora into the ILP algorithm in order to improve quality of induced class expressions

Integrating Distributional, Compositional, and Relational Approaches to Neural Word Representations

When the field of natural language processing (NLP) entered the era of deep neural networks, the task of representing basic units of language, an inherently sparse and symbolic medium, using low-dimensional dense real-valued vectors, or embeddings, became crucial. The dominant technique to perform this task has for years been to segment input text sequences into space-delimited words, for which embeddings are trained over a large corpus by means of leveraging distributional information: a word is reducible to the set of contexts it appears in. This approach is powerful but imperfect; words not seen during the embedding learning phase, known as out-of-vocabulary words (OOVs), emerge in any plausible application where embeddings are used. One approach applied in order to combat this and other shortcomings is the incorporation of compositional information obtained from the surface form of words, enabling the representation of morphological regularities and increasing robustness to typographical errors. Another approach leverages word-sense information and relations curated in large semantic graph resources, offering a supervised signal for embedding space structure and improving representations for domain-specific rare words. In this dissertation, I offer several analyses and remedies for the OOV problem based on the utilization of character-level compositional information in multiple languages and the structure of semantic knowledge in English. In addition, I provide two novel datasets for the continued exploration of vocabulary expansion in English: one with a taxonomic emphasis on novel word formation, and the other generated by a real-world data-driven use case in the entity graph domain. Finally, recognizing the recent shift in NLP towards contextualized representations of subword tokens, I describe the form in which the OOV problem still appears in these methods, and apply an integrative compositional model to address it.Ph.D

Machine learning for managing structured and semi-structured data

As the digitalization of private, commercial, and public sectors advances rapidly, an increasing amount of data is becoming available. In order to gain insights or knowledge from these enormous amounts of raw data, a deep analysis is essential. The immense volume requires highly automated processes with minimal manual interaction. In recent years, machine learning methods have taken on a central role in this task. In addition to the individual data points, their interrelationships often play a decisive role, e.g. whether two patients are related to each other or whether they are treated by the same physician. Hence, relational learning is an important branch of research, which studies how to harness this explicitly available structural information between different data points. Recently, graph neural networks have gained importance. These can be considered an extension of convolutional neural networks from regular grids to general (irregular) graphs. Knowledge graphs play an essential role in representing facts about entities in a machine-readable way. While great efforts are made to store as many facts as possible in these graphs, they often remain incomplete, i.e., true facts are missing. Manual verification and expansion of the graphs is becoming increasingly difficult due to the large volume of data and must therefore be assisted or substituted by automated procedures which predict missing facts. The field of knowledge graph completion can be roughly divided into two categories: Link Prediction and Entity Alignment. In Link Prediction, machine learning models are trained to predict unknown facts between entities based on the known facts. Entity Alignment aims at identifying shared entities between graphs in order to link several such knowledge graphs based on some provided seed alignment pairs. In this thesis, we present important advances in the field of knowledge graph completion. For Entity Alignment, we show how to reduce the number of required seed alignments while maintaining performance by novel active learning techniques. We also discuss the power of textual features and show that graph-neural-network-based methods have difficulties with noisy alignment data. For Link Prediction, we demonstrate how to improve the prediction for unknown entities at training time by exploiting additional metadata on individual statements, often available in modern graphs. Supported with results from a large-scale experimental study, we present an analysis of the effect of individual components of machine learning models, e.g., the interaction function or loss criterion, on the task of link prediction. We also introduce a software library that simplifies the implementation and study of such components and makes them accessible to a wide research community, ranging from relational learning researchers to applied fields, such as life sciences. Finally, we propose a novel metric for evaluating ranking results, as used for both completion tasks. It allows for easier interpretation and comparison, especially in cases with different numbers of ranking candidates, as encountered in the de-facto standard evaluation protocols for both tasks.Mit der rasant fortschreitenden Digitalisierung des privaten, kommerziellen und öffentlichen Sektors werden immer größere Datenmengen verfügbar. Um aus diesen enormen Mengen an Rohdaten Erkenntnisse oder Wissen zu gewinnen, ist eine tiefgehende Analyse unerlässlich. Das immense Volumen erfordert hochautomatisierte Prozesse mit minimaler manueller Interaktion. In den letzten Jahren haben Methoden des maschinellen Lernens eine zentrale Rolle bei dieser Aufgabe eingenommen. Neben den einzelnen Datenpunkten spielen oft auch deren Zusammenhänge eine entscheidende Rolle, z.B. ob zwei Patienten miteinander verwandt sind oder ob sie vom selben Arzt behandelt werden. Daher ist das relationale Lernen ein wichtiger Forschungszweig, der untersucht, wie diese explizit verfügbaren strukturellen Informationen zwischen verschiedenen Datenpunkten nutzbar gemacht werden können. In letzter Zeit haben Graph Neural Networks an Bedeutung gewonnen. Diese können als eine Erweiterung von CNNs von regelmäßigen Gittern auf allgemeine (unregelmäßige) Graphen betrachtet werden. Wissensgraphen spielen eine wesentliche Rolle bei der Darstellung von Fakten über Entitäten in maschinenlesbaren Form. Obwohl große Anstrengungen unternommen werden, so viele Fakten wie möglich in diesen Graphen zu speichern, bleiben sie oft unvollständig, d. h. es fehlen Fakten. Die manuelle Überprüfung und Erweiterung der Graphen wird aufgrund der großen Datenmengen immer schwieriger und muss daher durch automatisierte Verfahren unterstützt oder ersetzt werden, die fehlende Fakten vorhersagen. Das Gebiet der Wissensgraphenvervollständigung lässt sich grob in zwei Kategorien einteilen: Link Prediction und Entity Alignment. Bei der Link Prediction werden maschinelle Lernmodelle trainiert, um unbekannte Fakten zwischen Entitäten auf der Grundlage der bekannten Fakten vorherzusagen. Entity Alignment zielt darauf ab, gemeinsame Entitäten zwischen Graphen zu identifizieren, um mehrere solcher Wissensgraphen auf der Grundlage einiger vorgegebener Paare zu verknüpfen. In dieser Arbeit stellen wir wichtige Fortschritte auf dem Gebiet der Vervollständigung von Wissensgraphen vor. Für das Entity Alignment zeigen wir, wie die Anzahl der benötigten Paare reduziert werden kann, während die Leistung durch neuartige aktive Lerntechniken erhalten bleibt. Wir erörtern auch die Leistungsfähigkeit von Textmerkmalen und zeigen, dass auf Graph-Neural-Networks basierende Methoden Schwierigkeiten mit verrauschten Paar-Daten haben. Für die Link Prediction demonstrieren wir, wie die Vorhersage für unbekannte Entitäten zur Trainingszeit verbessert werden kann, indem zusätzliche Metadaten zu einzelnen Aussagen genutzt werden, die oft in modernen Graphen verfügbar sind. Gestützt auf Ergebnisse einer groß angelegten experimentellen Studie präsentieren wir eine Analyse der Auswirkungen einzelner Komponenten von Modellen des maschinellen Lernens, z. B. der Interaktionsfunktion oder des Verlustkriteriums, auf die Aufgabe der Link Prediction. Außerdem stellen wir eine Softwarebibliothek vor, die die Implementierung und Untersuchung solcher Komponenten vereinfacht und sie einer breiten Forschungsgemeinschaft zugänglich macht, die von Forschern im Bereich des relationalen Lernens bis hin zu angewandten Bereichen wie den Biowissenschaften reicht. Schließlich schlagen wir eine neuartige Metrik für die Bewertung von Ranking-Ergebnissen vor, wie sie für beide Aufgaben verwendet wird. Sie ermöglicht eine einfachere Interpretation und einen leichteren Vergleich, insbesondere in Fällen mit einer unterschiedlichen Anzahl von Kandidaten, wie sie in den de-facto Standardbewertungsprotokollen für beide Aufgaben vorkommen

Reservoir Computing for Learning in Structured Domains

The study of learning models for direct processing complex data structures has gained an increasing interest within the Machine Learning (ML) community during the last decades. In this concern, efficiency, effectiveness and adaptivity of the ML models on large classes of data structures represent challenging and open research issues. The paradigm under consideration is Reservoir Computing (RC), a novel and extremely efficient methodology for modeling Recurrent Neural Networks (RNN) for adaptive sequence processing. RC comprises a number of different neural models, among which the Echo State Network (ESN) probably represents the most popular, used and studied one. Another research area of interest is represented by Recursive Neural Networks (RecNNs), constituting a class of neural network models recently proposed for dealing with hierarchical data structures directly. In this thesis the RC paradigm is investigated and suitably generalized in order to approach the problems arising from learning in structured domains. The research studies described in this thesis cover classes of data structures characterized by increasing complexity, from sequences, to trees and graphs structures. Accordingly, the research focus goes progressively from the analysis of standard ESNs for sequence processing, to the development of new models for trees and graphs structured domains. The analysis of ESNs for sequence processing addresses the interesting problem of identifying and characterizing the relevant factors which influence the reservoir dynamics and the ESN performance. Promising applications of ESNs in the emerging field of Ambient Assisted Living are also presented and discussed. Moving towards highly structured data representations, the ESN model is extended to deal with complex structures directly, resulting in the proposed TreeESN, which is suitable for domains comprising hierarchical structures, and Graph-ESN, which generalizes the approach to a large class of cyclic/acyclic directed/undirected labeled graphs. TreeESNs and GraphESNs represent both novel RC models for structured data and extremely efficient approaches for modeling RecNNs, eventually contributing to the definition of an RC framework for learning in structured domains. The problem of adaptively exploiting the state space in GraphESNs is also investigated, with specific regard to tasks in which input graphs are required to be mapped into flat vectorial outputs, resulting in the GraphESN-wnn and GraphESN-NG models. As a further point, the generalization performance of the proposed models is evaluated considering both artificial and complex real-world tasks from different application domains, including Chemistry, Toxicology and Document Processing