A combinatorial approach to knot recognition

This is a report on our ongoing research on a combinatorial approach to knot recognition, using coloring of knots by certain algebraic objects called quandles. The aim of the paper is to summarize the mathematical theory of knot coloring in a compact, accessible manner, and to show how to use it for computational purposes. In particular, we address how to determine colorability of a knot, and propose to use SAT solving to search for colorings. The computational complexity of the problem, both in theory and in our implementation, is discussed. In the last part, we explain how coloring can be utilized in knot recognition

Conflict-Free Coloring of Planar Graphs

A conflict-free k-coloring of a graph assigns one of k different colors to some of the vertices such that, for every vertex v, there is a color that is assigned to exactly one vertex among v and v's neighbors. Such colorings have applications in wireless networking, robotics, and geometry, and are well-studied in graph theory. Here we study the natural problem of the conflict-free chromatic number chi_CF(G) (the smallest k for which conflict-free k-colorings exist). We provide results both for closed neighborhoods N[v], for which a vertex v is a member of its neighborhood, and for open neighborhoods N(v), for which vertex v is not a member of its neighborhood. For closed neighborhoods, we prove the conflict-free variant of the famous Hadwiger Conjecture: If an arbitrary graph G does not contain K_{k+1} as a minor, then chi_CF(G) <= k. For planar graphs, we obtain a tight worst-case bound: three colors are sometimes necessary and always sufficient. We also give a complete characterization of the computational complexity of conflict-free coloring. Deciding whether chi_CF(G)<= 1 is NP-complete for planar graphs G, but polynomial for outerplanar graphs. Furthermore, deciding whether chi_CF(G)<= 2 is NP-complete for planar graphs G, but always true for outerplanar graphs. For the bicriteria problem of minimizing the number of colored vertices subject to a given bound k on the number of colors, we give a full algorithmic characterization in terms of complexity and approximation for outerplanar and planar graphs. For open neighborhoods, we show that every planar bipartite graph has a conflict-free coloring with at most four colors; on the other hand, we prove that for k in {1,2,3}, it is NP-complete to decide whether a planar bipartite graph has a conflict-free k-coloring. Moreover, we establish that any general} planar graph has a conflict-free coloring with at most eight colors.Comment: 30 pages, 17 figures; full version (to appear in SIAM Journal on Discrete Mathematics) of extended abstract that appears in Proceeedings of the Twenty-Eighth Annual ACM-SIAM Symposium on Discrete Algorithms (SODA 2017), pp. 1951-196

The Complexity of the List Partition Problem for Graphs

The k-partition problem is as follows: Given a graph G and a positive integer k, partition the vertices of G into at most k parts A1, A2, . . . , Ak, where it may be specified that Ai induces a stable set, a clique, or an arbitrary subgraph, and pairs Ai, Aj (i≠j) be completely nonadjacent, completely adjacent, or arbitrarily adjacent. The list k-partition problem generalizes the k-partition problem by specifying for each vertex x, a list L(x) of parts in which it is allowed to be placed. Many well-known graph problems can be formulated as list k-partition problems: e.g., 3-colorability, clique cutset, stable cutset, homogeneous set, skew partition, and 2-clique cutset. We classify, with the exception of two polynomially equivalent problems, each list 4-partition problem as either solvable in polynomial time or NP-complete. In doing so, we provide polynomial-time algorithms for many problems whose polynomial-time solvability was open, including the list 2-clique cutset problem. This also allows us to classify each list generalized 2-clique cutset problem and list generalized skew partition problem as solvable in polynomial time or NP-complete

Solving Hard Computational Problems Efficiently: Asymptotic Parametric Complexity 3-Coloring Algorithm

Many practical problems in almost all scientific and technological disciplines have been classified as computationally hard (NP-hard or even NP-complete). In life sciences, combinatorial optimization problems frequently arise in molecular biology, e.g., genome sequencing; global alignment of multiple genomes; identifying siblings or discovery of dysregulated pathways.In almost all of these problems, there is the need for proving a hypothesis about certain property of an object that can be present only when it adopts some particular admissible structure (an NP-certificate) or be absent (no admissible structure), however, none of the standard approaches can discard the hypothesis when no solution can be found, since none can provide a proof that there is no admissible structure. This article presents an algorithm that introduces a novel type of solution method to "efficiently" solve the graph 3-coloring problem; an NP-complete problem. The proposed method provides certificates (proofs) in both cases: present or absent, so it is possible to accept or reject the hypothesis on the basis of a rigorous proof. It provides exact solutions and is polynomial-time (i.e., efficient) however parametric. The only requirement is sufficient computational power, which is controlled by the parameter $\alpha\in\mathbb{N}$. Nevertheless, here it is proved that the probability of requiring a value of $\alpha>k$ to obtain a solution for a random graph decreases exponentially: $P(\alpha>k) \leq 2^{-(k+1)}$, making tractable almost all problem instances. Thorough experimental analyses were performed. The algorithm was tested on random graphs, planar graphs and 4-regular planar graphs. The obtained experimental results are in accordance with the theoretical expected results.Comment: Working pape

Near-colorings: non-colorable graphs and NP-completeness

A graph G is (d_1,..,d_l)-colorable if the vertex set of G can be partitioned into subsets V_1,..,V_l such that the graph G[V_i] induced by the vertices of V_i has maximum degree at most d_i for all 1 <= i <= l. In this paper, we focus on complexity aspects of such colorings when l=2,3. More precisely, we prove that, for any fixed integers k,j,g with (k,j) distinct form (0,0) and g >= 3, either every planar graph with girth at least g is (k,j)-colorable or it is NP-complete to determine whether a planar graph with girth at least g is (k,j)-colorable. Also, for any fixed integer k, it is NP-complete to determine whether a planar graph that is either (0,0,0)-colorable or non-(k,k,1)-colorable is (0,0,0)-colorable. Additionally, we exhibit non-(3,1)-colorable planar graphs with girth 5 and non-(2,0)-colorable planar graphs with girth 7