New Algorithms for Solving Tropical Linear Systems

The problem of solving tropical linear systems, a natural problem of tropical mathematics, has already proven to be very interesting from the algorithmic point of view: it is known to be in $NP\cap coNP$ but no polynomial time algorithm is known, although counterexamples for existing pseudopolynomial algorithms are (and have to be) very complex. In this work, we continue the study of algorithms for solving tropical linear systems. First, we present a new reformulation of Grigoriev's algorithm that brings it closer to the algorithm of Akian, Gaubert, and Guterman; this lets us formulate a whole family of new algorithms, and we present algorithms from this family for which no known superpolynomial counterexamples work. Second, we present a family of algorithms for solving overdetermined tropical systems. We show that for weakly overdetermined systems, there are polynomial algorithms in this family. We also present a concrete algorithm from this family that can solve a tropical linear system defined by an $m\times n$ matrix with maximal element $M$ in time $\Theta\left({m \choose n} \mathrm{poly}\left(m, n, \log M\right)\right)$, and this time matches the complexity of the best of previously known algorithms for feasibility testing.Comment: 17 page

Tropical differential equations

Tropical differential equations are introduced and an algorithm is designed which tests solvability of a system of tropical linear differential equations within the complexity polynomial in the size of the system and in its coefficients. Moreover, we show that there exists a minimal solution, and the algorithm constructs it (in case of solvability). This extends a similar complexity bound established for tropical linear systems. In case of tropical linear differential systems in one variable a polynomial complexity algorithm for testing its solvability is designed. We prove also that the problem of solvability of a system of tropical non-linear differential equations in one variable is $NP$-hard, and this problem for arbitrary number of variables belongs to $NP$. Similar to tropical algebraic equations, a tropical differential equation expresses the (necessary) condition on the dominant term in the issue of solvability of a differential equation in power series

Polynomial-Time Amoeba Neighborhood Membership and Faster Localized Solving

We derive efficient algorithms for coarse approximation of algebraic hypersurfaces, useful for estimating the distance between an input polynomial zero set and a given query point. Our methods work best on sparse polynomials of high degree (in any number of variables) but are nevertheless completely general. The underlying ideas, which we take the time to describe in an elementary way, come from tropical geometry. We thus reduce a hard algebraic problem to high-precision linear optimization, proving new upper and lower complexity estimates along the way.Comment: 15 pages, 9 figures. Submitted to a conference proceeding

On a tropical dual Nullstellensatz

Since a tropical Nullstellensatz fails even for tropical univariate polynomials we study a conjecture on a tropical {\it dual} Nullstellensatz for tropical polynomial systems in terms of solvability of a tropical linear system with the Cayley matrix associated to the tropical polynomial system. The conjecture on a tropical effective dual Nullstellensatz is proved for tropical univariate polynomials

Tropical geometries and dynamics of biochemical networks. Application to hybrid cell cycle models

We use the Litvinov-Maslov correspondence principle to reduce and hybridize networks of biochemical reactions. We apply this method to a cell cycle oscillator model. The reduced and hybridized model can be used as a hybrid model for the cell cycle. We also propose a practical recipe for detecting quasi-equilibrium QE reactions and quasi-steady state QSS species in biochemical models with rational rate functions and use this recipe for model reduction. Interestingly, the QE/QSS invariant manifold of the smooth model and the reduced dynamics along this manifold can be put into correspondence to the tropical variety of the hybridization and to sliding modes along this variety, respectivelyComment: conference SASB 2011, to be published in Electronic Notes in Theoretical Computer Scienc

On the frontiers of polynomial computations in tropical geometry

We study some basic algorithmic problems concerning the intersection of tropical hypersurfaces in general dimension: deciding whether this intersection is nonempty, whether it is a tropical variety, and whether it is connected, as well as counting the number of connected components. We characterize the borderline between tractable and hard computations by proving $\mathcal{NP}$-hardness and #$\mathcal{P}$-hardness results under various strong restrictions of the input data, as well as providing polynomial time algorithms for various other restrictions.Comment: 17 pages, 5 figures. To appear in Journal of Symbolic Computatio

The tropical shadow-vertex algorithm solves mean payoff games in polynomial time on average

We introduce an algorithm which solves mean payoff games in polynomial time on average, assuming the distribution of the games satisfies a flip invariance property on the set of actions associated with every state. The algorithm is a tropical analogue of the shadow-vertex simplex algorithm, which solves mean payoff games via linear feasibility problems over the tropical semiring $(\mathbb{R} \cup \{-\infty\}, \max, +)$. The key ingredient in our approach is that the shadow-vertex pivoting rule can be transferred to tropical polyhedra, and that its computation reduces to optimal assignment problems through Pl\"ucker relations.Comment: 17 pages, 7 figures, appears in 41st International Colloquium, ICALP 2014, Copenhagen, Denmark, July 8-11, 2014, Proceedings, Part